Hb_000412_030

Information

Type -
Description -
Location Contig412: 41294-45744
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18070g
description POPTRDRAFT_856184; glycosyl hydrolase family 35 family protein
nr
ID XP_002306183.1
description glycosyl hydrolase family 35 family protein [Populus trichocarpa]
swissprot
ID Q9SCU9
description Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1
trembl
ID B9H197
description Beta-galactosidase OS=Populus trichocarpa GN=POPTR_0004s18070g PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000412_030 0.0 - - glycosyl hydrolase family 35 family protein [Populus trichocarpa]
2 Hb_000039_070 0.1060943224 transcription factor TF Family: MYB MYB21, putative [Theobroma cacao]
3 Hb_062904_010 0.1069290806 - - hypothetical protein RCOM_0725500 [Ricinus communis]
4 Hb_012652_020 0.1719322013 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
5 Hb_006446_070 0.1776248989 - - Zinc-binding dehydrogenase family protein [Theobroma cacao]
6 Hb_000614_340 0.1834474445 - - Salutaridinol 7-O-acetyltransferase, putative [Ricinus communis]
7 Hb_000010_120 0.1949180958 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
8 Hb_173102_010 0.1960497503 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
9 Hb_001114_290 0.1962846745 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002997_010 0.1973630735 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
11 Hb_145535_010 0.1977823243 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
12 Hb_169426_010 0.1982391028 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_005747_040 0.1982501272 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
14 Hb_005780_010 0.1982827576 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_180483_010 0.1983711967 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_106528_010 0.198481102 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
17 Hb_002281_070 0.1995703692 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
18 Hb_008367_020 0.1997550679 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
19 Hb_002551_010 0.2002130615 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_003992_250 0.2009516118 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]

Gene co-expression network

sample Hb_000412_030 Hb_000412_030 Hb_000039_070 Hb_000039_070 Hb_000412_030--Hb_000039_070 Hb_062904_010 Hb_062904_010 Hb_000412_030--Hb_062904_010 Hb_012652_020 Hb_012652_020 Hb_000412_030--Hb_012652_020 Hb_006446_070 Hb_006446_070 Hb_000412_030--Hb_006446_070 Hb_000614_340 Hb_000614_340 Hb_000412_030--Hb_000614_340 Hb_000010_120 Hb_000010_120 Hb_000412_030--Hb_000010_120 Hb_000039_070--Hb_012652_020 Hb_000039_070--Hb_006446_070 Hb_000039_070--Hb_000614_340 Hb_001114_290 Hb_001114_290 Hb_000039_070--Hb_001114_290 Hb_005747_040 Hb_005747_040 Hb_000039_070--Hb_005747_040 Hb_062904_010--Hb_000614_340 Hb_062904_010--Hb_006446_070 Hb_062904_010--Hb_000039_070 Hb_007769_010 Hb_007769_010 Hb_062904_010--Hb_007769_010 Hb_000976_070 Hb_000976_070 Hb_062904_010--Hb_000976_070 Hb_008367_020 Hb_008367_020 Hb_012652_020--Hb_008367_020 Hb_001410_090 Hb_001410_090 Hb_012652_020--Hb_001410_090 Hb_000488_040 Hb_000488_040 Hb_012652_020--Hb_000488_040 Hb_012652_020--Hb_001114_290 Hb_012652_020--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_012652_020--Hb_106528_010 Hb_006446_070--Hb_000614_340 Hb_176138_010 Hb_176138_010 Hb_006446_070--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_006446_070--Hb_006810_080 Hb_006124_010 Hb_006124_010 Hb_006446_070--Hb_006124_010 Hb_022693_100 Hb_022693_100 Hb_006446_070--Hb_022693_100 Hb_000866_480 Hb_000866_480 Hb_006446_070--Hb_000866_480 Hb_000526_130 Hb_000526_130 Hb_000614_340--Hb_000526_130 Hb_009230_030 Hb_009230_030 Hb_000614_340--Hb_009230_030 Hb_003724_030 Hb_003724_030 Hb_000614_340--Hb_003724_030 Hb_001504_290 Hb_001504_290 Hb_000614_340--Hb_001504_290 Hb_000614_340--Hb_000866_480 Hb_006478_180 Hb_006478_180 Hb_000010_120--Hb_006478_180 Hb_002325_020 Hb_002325_020 Hb_000010_120--Hb_002325_020 Hb_000007_110 Hb_000007_110 Hb_000010_120--Hb_000007_110 Hb_002758_040 Hb_002758_040 Hb_000010_120--Hb_002758_040 Hb_011382_030 Hb_011382_030 Hb_000010_120--Hb_011382_030 Hb_001999_220 Hb_001999_220 Hb_000010_120--Hb_001999_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0485166 0 0 0 0.00794782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0190677 0 0 0.286139 0

CAGE analysis