Hb_000976_070

Information

Type -
Description -
Location Contig976: 96320-106038
Sequence    

Annotation

kegg
ID rcu:RCOM_1575750
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_002513399.1
description gulonolactone oxidase, putative [Ricinus communis]
swissprot
ID Q9LTS3
description Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1
trembl
ID B9RI30
description Gulonolactone oxidase, putative OS=Ricinus communis GN=RCOM_1575750 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64048: 96621-96832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_070 0.0 - - gulonolactone oxidase, putative [Ricinus communis]
2 Hb_000614_340 0.1834394215 - - Salutaridinol 7-O-acetyltransferase, putative [Ricinus communis]
3 Hb_000039_070 0.1852182257 transcription factor TF Family: MYB MYB21, putative [Theobroma cacao]
4 Hb_003992_250 0.1861524278 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
5 Hb_006446_070 0.1881296137 - - Zinc-binding dehydrogenase family protein [Theobroma cacao]
6 Hb_062904_010 0.2033909448 - - hypothetical protein RCOM_0725500 [Ricinus communis]
7 Hb_000412_030 0.205244492 - - glycosyl hydrolase family 35 family protein [Populus trichocarpa]
8 Hb_000010_120 0.2117128295 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
9 Hb_002874_080 0.2176987029 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_000597_110 0.2236535488 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
11 Hb_001080_310 0.2281462656 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
12 Hb_006478_180 0.2282772008 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
13 Hb_001205_020 0.2304850618 - - -
14 Hb_000251_100 0.2315058854 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_024621_030 0.2327736008 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
16 Hb_000220_160 0.2331596352 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
17 Hb_161981_020 0.240743464 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_006124_010 0.2407446861 - - -
19 Hb_021931_030 0.240862468 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
20 Hb_002281_070 0.2410533623 - - hypothetical protein JCGZ_04352 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_070 Hb_000976_070 Hb_000614_340 Hb_000614_340 Hb_000976_070--Hb_000614_340 Hb_000039_070 Hb_000039_070 Hb_000976_070--Hb_000039_070 Hb_003992_250 Hb_003992_250 Hb_000976_070--Hb_003992_250 Hb_006446_070 Hb_006446_070 Hb_000976_070--Hb_006446_070 Hb_062904_010 Hb_062904_010 Hb_000976_070--Hb_062904_010 Hb_000412_030 Hb_000412_030 Hb_000976_070--Hb_000412_030 Hb_000614_340--Hb_006446_070 Hb_000526_130 Hb_000526_130 Hb_000614_340--Hb_000526_130 Hb_009230_030 Hb_009230_030 Hb_000614_340--Hb_009230_030 Hb_003724_030 Hb_003724_030 Hb_000614_340--Hb_003724_030 Hb_001504_290 Hb_001504_290 Hb_000614_340--Hb_001504_290 Hb_000866_480 Hb_000866_480 Hb_000614_340--Hb_000866_480 Hb_000039_070--Hb_000412_030 Hb_012652_020 Hb_012652_020 Hb_000039_070--Hb_012652_020 Hb_000039_070--Hb_006446_070 Hb_000039_070--Hb_000614_340 Hb_001114_290 Hb_001114_290 Hb_000039_070--Hb_001114_290 Hb_005747_040 Hb_005747_040 Hb_000039_070--Hb_005747_040 Hb_003992_250--Hb_000039_070 Hb_003538_020 Hb_003538_020 Hb_003992_250--Hb_003538_020 Hb_001190_060 Hb_001190_060 Hb_003992_250--Hb_001190_060 Hb_003992_250--Hb_000412_030 Hb_000390_260 Hb_000390_260 Hb_003992_250--Hb_000390_260 Hb_176138_010 Hb_176138_010 Hb_006446_070--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_006446_070--Hb_006810_080 Hb_006124_010 Hb_006124_010 Hb_006446_070--Hb_006124_010 Hb_022693_100 Hb_022693_100 Hb_006446_070--Hb_022693_100 Hb_006446_070--Hb_000866_480 Hb_062904_010--Hb_000412_030 Hb_062904_010--Hb_000614_340 Hb_062904_010--Hb_006446_070 Hb_062904_010--Hb_000039_070 Hb_007769_010 Hb_007769_010 Hb_062904_010--Hb_007769_010 Hb_000412_030--Hb_012652_020 Hb_000412_030--Hb_006446_070 Hb_000412_030--Hb_000614_340 Hb_000010_120 Hb_000010_120 Hb_000412_030--Hb_000010_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.122566 0 0 0.00885429 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0401683 0.0158034 0 0.395725 0

CAGE analysis