Hb_000390_260

Information

Type transcription factor
Description TF Family: MYB
Location Contig390: 270199-271824
Sequence    

Annotation

kegg
ID tcc:TCM_025488
description Myb domain protein 107
nr
ID XP_007029608.1
description Myb domain protein 107 [Theobroma cacao]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID A0A061EYD8
description Myb domain protein 107 OS=Theobroma cacao GN=TCM_025488 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor myb39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_260 0.0 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
2 Hb_024621_030 0.1763025896 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
3 Hb_003992_250 0.2023286528 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
4 Hb_000975_150 0.2147126917 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
5 Hb_004195_180 0.2192379345 - - unnamed protein product [Coffea canephora]
6 Hb_002006_140 0.2284777611 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
7 Hb_027472_230 0.2355119264 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
8 Hb_000976_070 0.2429275901 - - gulonolactone oxidase, putative [Ricinus communis]
9 Hb_001190_060 0.2605482905 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
10 Hb_002821_020 0.2637811678 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter C family member 4 [Vitis vinifera]
11 Hb_000140_160 0.2666175937 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
12 Hb_004800_170 0.2676456234 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
13 Hb_000699_170 0.2709463905 - - myosin XI, putative [Ricinus communis]
14 Hb_002890_400 0.2756820696 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
15 Hb_003071_060 0.2757681559 - - PREDICTED: beta-galactosidase 15-like [Jatropha curcas]
16 Hb_001045_050 0.2791486026 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
17 Hb_005389_190 0.281772077 - - glutamate receptor 2 plant, putative [Ricinus communis]
18 Hb_006478_180 0.2836088064 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
19 Hb_000597_110 0.2845258354 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
20 Hb_000010_120 0.2860466034 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]

Gene co-expression network

sample Hb_000390_260 Hb_000390_260 Hb_024621_030 Hb_024621_030 Hb_000390_260--Hb_024621_030 Hb_003992_250 Hb_003992_250 Hb_000390_260--Hb_003992_250 Hb_000975_150 Hb_000975_150 Hb_000390_260--Hb_000975_150 Hb_004195_180 Hb_004195_180 Hb_000390_260--Hb_004195_180 Hb_002006_140 Hb_002006_140 Hb_000390_260--Hb_002006_140 Hb_027472_230 Hb_027472_230 Hb_000390_260--Hb_027472_230 Hb_004800_170 Hb_004800_170 Hb_024621_030--Hb_004800_170 Hb_000699_170 Hb_000699_170 Hb_024621_030--Hb_000699_170 Hb_001045_050 Hb_001045_050 Hb_024621_030--Hb_001045_050 Hb_024621_030--Hb_000975_150 Hb_003435_060 Hb_003435_060 Hb_024621_030--Hb_003435_060 Hb_000039_070 Hb_000039_070 Hb_003992_250--Hb_000039_070 Hb_003538_020 Hb_003538_020 Hb_003992_250--Hb_003538_020 Hb_001190_060 Hb_001190_060 Hb_003992_250--Hb_001190_060 Hb_000976_070 Hb_000976_070 Hb_003992_250--Hb_000976_070 Hb_000412_030 Hb_000412_030 Hb_003992_250--Hb_000412_030 Hb_000975_150--Hb_004800_170 Hb_003096_050 Hb_003096_050 Hb_000975_150--Hb_003096_050 Hb_007894_250 Hb_007894_250 Hb_000975_150--Hb_007894_250 Hb_000056_330 Hb_000056_330 Hb_000975_150--Hb_000056_330 Hb_000975_150--Hb_001190_060 Hb_004195_180--Hb_027472_230 Hb_008289_050 Hb_008289_050 Hb_004195_180--Hb_008289_050 Hb_001720_060 Hb_001720_060 Hb_004195_180--Hb_001720_060 Hb_004195_180--Hb_024621_030 Hb_004195_180--Hb_000976_070 Hb_003428_100 Hb_003428_100 Hb_002006_140--Hb_003428_100 Hb_112082_030 Hb_112082_030 Hb_002006_140--Hb_112082_030 Hb_001250_140 Hb_001250_140 Hb_002006_140--Hb_001250_140 Hb_002006_140--Hb_001045_050 Hb_002311_240 Hb_002311_240 Hb_002006_140--Hb_002311_240 Hb_005389_190 Hb_005389_190 Hb_002006_140--Hb_005389_190 Hb_027472_230--Hb_008289_050 Hb_027472_230--Hb_001720_060 Hb_001832_020 Hb_001832_020 Hb_027472_230--Hb_001832_020 Hb_001085_100 Hb_001085_100 Hb_027472_230--Hb_001085_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0317954 0.482826 0.03621 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.398939 0.427953 0 2.65855 0.118678

CAGE analysis