Hb_001720_060

Information

Type transcription factor
Description TF Family: NAC
Location Contig1720: 88421-89460
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02050g
description POPTRDRAFT_763840; hypothetical protein
nr
ID XP_012066377.1
description PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
swissprot
ID Q52QH4
description NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1
trembl
ID R4N5T7
description NAC transcription factor 091 OS=Jatropha curcas GN=JCGZ_23747 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001720_060 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
2 Hb_008289_050 0.1668207932 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
3 Hb_027472_230 0.1880645631 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
4 Hb_004195_180 0.2110068245 - - unnamed protein product [Coffea canephora]
5 Hb_002253_060 0.2340522546 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003435_060 0.2425059304 - - carbonic anhydrase, putative [Ricinus communis]
7 Hb_004460_050 0.2540919527 - - chaperone protein DNAj, putative [Ricinus communis]
8 Hb_024621_030 0.2735090094 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
9 Hb_000300_130 0.2764805574 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
10 Hb_003398_030 0.2832105228 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
11 Hb_001085_100 0.2853265257 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_006420_090 0.2873198846 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
13 Hb_001504_120 0.2874970356 - - -
14 Hb_000260_290 0.2900363779 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
15 Hb_001433_180 0.2910397354 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
16 Hb_011077_020 0.2953029425 - - kinase, putative [Ricinus communis]
17 Hb_000868_100 0.3013612443 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
18 Hb_001148_030 0.3016886713 - - -
19 Hb_000048_020 0.310108828 - - -
20 Hb_001832_020 0.3118474249 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]

Gene co-expression network

sample Hb_001720_060 Hb_001720_060 Hb_008289_050 Hb_008289_050 Hb_001720_060--Hb_008289_050 Hb_027472_230 Hb_027472_230 Hb_001720_060--Hb_027472_230 Hb_004195_180 Hb_004195_180 Hb_001720_060--Hb_004195_180 Hb_002253_060 Hb_002253_060 Hb_001720_060--Hb_002253_060 Hb_003435_060 Hb_003435_060 Hb_001720_060--Hb_003435_060 Hb_004460_050 Hb_004460_050 Hb_001720_060--Hb_004460_050 Hb_008289_050--Hb_027472_230 Hb_008289_050--Hb_004195_180 Hb_003398_030 Hb_003398_030 Hb_008289_050--Hb_003398_030 Hb_001085_100 Hb_001085_100 Hb_008289_050--Hb_001085_100 Hb_000077_240 Hb_000077_240 Hb_008289_050--Hb_000077_240 Hb_027472_230--Hb_004195_180 Hb_001832_020 Hb_001832_020 Hb_027472_230--Hb_001832_020 Hb_000390_260 Hb_000390_260 Hb_027472_230--Hb_000390_260 Hb_027472_230--Hb_001085_100 Hb_004195_180--Hb_000390_260 Hb_024621_030 Hb_024621_030 Hb_004195_180--Hb_024621_030 Hb_000976_070 Hb_000976_070 Hb_004195_180--Hb_000976_070 Hb_013766_010 Hb_013766_010 Hb_002253_060--Hb_013766_010 Hb_004291_010 Hb_004291_010 Hb_002253_060--Hb_004291_010 Hb_003106_120 Hb_003106_120 Hb_002253_060--Hb_003106_120 Hb_001079_020 Hb_001079_020 Hb_002253_060--Hb_001079_020 Hb_000836_490 Hb_000836_490 Hb_002253_060--Hb_000836_490 Hb_008014_030 Hb_008014_030 Hb_003435_060--Hb_008014_030 Hb_001045_050 Hb_001045_050 Hb_003435_060--Hb_001045_050 Hb_000300_130 Hb_000300_130 Hb_003435_060--Hb_000300_130 Hb_003435_060--Hb_024621_030 Hb_003435_060--Hb_003106_120 Hb_000868_100 Hb_000868_100 Hb_004460_050--Hb_000868_100 Hb_000160_240 Hb_000160_240 Hb_004460_050--Hb_000160_240 Hb_000260_290 Hb_000260_290 Hb_004460_050--Hb_000260_290 Hb_000694_060 Hb_000694_060 Hb_004460_050--Hb_000694_060 Hb_031527_060 Hb_031527_060 Hb_004460_050--Hb_031527_060 Hb_001117_070 Hb_001117_070 Hb_004460_050--Hb_001117_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.45774 0.0208712 0.048378 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.574053 1.25389 0.182145 1.86503 0

CAGE analysis