Hb_003398_030

Information

Type -
Description -
Location Contig3398: 94167-98618
Sequence    

Annotation

kegg
ID bdi:104583892
description uncharacterized LOC104583892
nr
ID XP_010236203.1
description PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
swissprot
ID Q95SX7
description Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster GN=RTase PE=2 SV=1
trembl
ID I1IFX6
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI3G61082 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_030 0.0 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
2 Hb_000077_240 0.0432149923 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
3 Hb_111347_010 0.1784972763 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
4 Hb_006907_120 0.1848767425 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
5 Hb_008289_050 0.2250579937 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
6 Hb_128051_010 0.2644604269 - - -
7 Hb_007105_010 0.2702123112 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
8 Hb_109268_010 0.2737298887 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
9 Hb_001720_060 0.2832105228 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
10 Hb_005779_050 0.2853170394 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
11 Hb_002180_010 0.2878913815 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_010288_040 0.2907316135 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
13 Hb_001022_040 0.2972508219 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
14 Hb_007951_130 0.2976002956 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
15 Hb_021888_120 0.3185454513 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
16 Hb_004195_180 0.3239354572 - - unnamed protein product [Coffea canephora]
17 Hb_027472_230 0.3245299233 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
18 Hb_001863_440 0.3246693593 - - Nodulin-26, putative [Ricinus communis]
19 Hb_003209_050 0.325757842 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
20 Hb_007451_060 0.3283318258 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]

Gene co-expression network

sample Hb_003398_030 Hb_003398_030 Hb_000077_240 Hb_000077_240 Hb_003398_030--Hb_000077_240 Hb_111347_010 Hb_111347_010 Hb_003398_030--Hb_111347_010 Hb_006907_120 Hb_006907_120 Hb_003398_030--Hb_006907_120 Hb_008289_050 Hb_008289_050 Hb_003398_030--Hb_008289_050 Hb_128051_010 Hb_128051_010 Hb_003398_030--Hb_128051_010 Hb_007105_010 Hb_007105_010 Hb_003398_030--Hb_007105_010 Hb_000077_240--Hb_006907_120 Hb_000077_240--Hb_111347_010 Hb_000077_240--Hb_128051_010 Hb_109268_010 Hb_109268_010 Hb_000077_240--Hb_109268_010 Hb_000077_240--Hb_007105_010 Hb_003158_020 Hb_003158_020 Hb_111347_010--Hb_003158_020 Hb_001022_040 Hb_001022_040 Hb_111347_010--Hb_001022_040 Hb_111347_010--Hb_128051_010 Hb_000853_130 Hb_000853_130 Hb_111347_010--Hb_000853_130 Hb_006907_120--Hb_007105_010 Hb_001189_060 Hb_001189_060 Hb_006907_120--Hb_001189_060 Hb_000186_210 Hb_000186_210 Hb_006907_120--Hb_000186_210 Hb_010288_040 Hb_010288_040 Hb_006907_120--Hb_010288_040 Hb_027472_230 Hb_027472_230 Hb_008289_050--Hb_027472_230 Hb_004195_180 Hb_004195_180 Hb_008289_050--Hb_004195_180 Hb_001720_060 Hb_001720_060 Hb_008289_050--Hb_001720_060 Hb_001085_100 Hb_001085_100 Hb_008289_050--Hb_001085_100 Hb_008289_050--Hb_000077_240 Hb_128051_010--Hb_109268_010 Hb_001022_060 Hb_001022_060 Hb_128051_010--Hb_001022_060 Hb_003209_050 Hb_003209_050 Hb_128051_010--Hb_003209_050 Hb_139138_010 Hb_139138_010 Hb_128051_010--Hb_139138_010 Hb_007105_010--Hb_001189_060 Hb_007105_010--Hb_010288_040 Hb_005779_050 Hb_005779_050 Hb_007105_010--Hb_005779_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.064592 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0522349 0.0821956 0 0.0327453 0

CAGE analysis