Hb_008289_050

Information

Type -
Description -
Location Contig8289: 80567-80875
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018395mg
description hypothetical protein
nr
ID KJB07824.1
description hypothetical protein B456_001G045900 [Gossypium raimondii]
swissprot
ID Q6NMF0
description CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1
trembl
ID A0A0D2PLU1
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G045900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008289_050 0.0 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
2 Hb_027472_230 0.1061512378 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
3 Hb_004195_180 0.1384782083 - - unnamed protein product [Coffea canephora]
4 Hb_001720_060 0.1668207932 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
5 Hb_003398_030 0.2250579937 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
6 Hb_001085_100 0.2615716914 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_000077_240 0.2658889609 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
8 Hb_008479_020 0.2676507127 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
9 Hb_001832_020 0.2835948881 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
10 Hb_002253_060 0.2838557504 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000048_020 0.2851553053 - - -
12 Hb_002180_010 0.294901118 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_003052_230 0.2968939662 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009813_080 0.3076770942 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
15 Hb_002311_170 0.3107773594 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
16 Hb_006420_090 0.3116772685 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
17 Hb_004460_050 0.3141415517 - - chaperone protein DNAj, putative [Ricinus communis]
18 Hb_000390_260 0.314793754 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
19 Hb_004525_060 0.3244936539 - - -
20 Hb_024621_030 0.3257220555 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_008289_050 Hb_008289_050 Hb_027472_230 Hb_027472_230 Hb_008289_050--Hb_027472_230 Hb_004195_180 Hb_004195_180 Hb_008289_050--Hb_004195_180 Hb_001720_060 Hb_001720_060 Hb_008289_050--Hb_001720_060 Hb_003398_030 Hb_003398_030 Hb_008289_050--Hb_003398_030 Hb_001085_100 Hb_001085_100 Hb_008289_050--Hb_001085_100 Hb_000077_240 Hb_000077_240 Hb_008289_050--Hb_000077_240 Hb_027472_230--Hb_004195_180 Hb_027472_230--Hb_001720_060 Hb_001832_020 Hb_001832_020 Hb_027472_230--Hb_001832_020 Hb_000390_260 Hb_000390_260 Hb_027472_230--Hb_000390_260 Hb_027472_230--Hb_001085_100 Hb_004195_180--Hb_001720_060 Hb_004195_180--Hb_000390_260 Hb_024621_030 Hb_024621_030 Hb_004195_180--Hb_024621_030 Hb_000976_070 Hb_000976_070 Hb_004195_180--Hb_000976_070 Hb_002253_060 Hb_002253_060 Hb_001720_060--Hb_002253_060 Hb_003435_060 Hb_003435_060 Hb_001720_060--Hb_003435_060 Hb_004460_050 Hb_004460_050 Hb_001720_060--Hb_004460_050 Hb_003398_030--Hb_000077_240 Hb_111347_010 Hb_111347_010 Hb_003398_030--Hb_111347_010 Hb_006907_120 Hb_006907_120 Hb_003398_030--Hb_006907_120 Hb_128051_010 Hb_128051_010 Hb_003398_030--Hb_128051_010 Hb_007105_010 Hb_007105_010 Hb_003398_030--Hb_007105_010 Hb_001085_100--Hb_001832_020 Hb_008479_020 Hb_008479_020 Hb_001085_100--Hb_008479_020 Hb_001856_090 Hb_001856_090 Hb_001085_100--Hb_001856_090 Hb_009813_080 Hb_009813_080 Hb_001085_100--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_001085_100--Hb_002311_170 Hb_000077_240--Hb_006907_120 Hb_000077_240--Hb_111347_010 Hb_000077_240--Hb_128051_010 Hb_109268_010 Hb_109268_010 Hb_000077_240--Hb_109268_010 Hb_000077_240--Hb_007105_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.631519 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.34782 0.821404 0 1.01149 0

CAGE analysis