Hb_004195_180

Information

Type -
Description -
Location Contig4195: 167109-167861
Sequence    

Annotation

kegg
ID osa:9269703
description Os06g0502600
nr
ID CDP14384.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068V1J9
description Coffea canephora DH200=94 genomic scaffold, scaffold_82 OS=Coffea canephora GN=GSCOC_T00040761001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_180 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_027472_230 0.0857202143 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
3 Hb_008289_050 0.1384782083 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
4 Hb_001720_060 0.2110068245 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
5 Hb_000390_260 0.2192379345 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
6 Hb_024621_030 0.2404459916 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
7 Hb_000976_070 0.2830845061 - - gulonolactone oxidase, putative [Ricinus communis]
8 Hb_001832_020 0.2878289951 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
9 Hb_003992_250 0.2933005083 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
10 Hb_000975_150 0.2972403179 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
11 Hb_002821_020 0.3040663483 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter C family member 4 [Vitis vinifera]
12 Hb_002253_060 0.3080925469 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001085_100 0.310879097 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_002180_010 0.3111135747 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000048_020 0.3128914129 - - -
16 Hb_001856_090 0.3146988459 - - Cellulose synthase-like B3, putative isoform 2 [Theobroma cacao]
17 Hb_001148_030 0.3156991148 - - -
18 Hb_008479_020 0.3206217331 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
19 Hb_003398_030 0.3239354572 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
20 Hb_003435_060 0.3272552307 - - carbonic anhydrase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004195_180 Hb_004195_180 Hb_027472_230 Hb_027472_230 Hb_004195_180--Hb_027472_230 Hb_008289_050 Hb_008289_050 Hb_004195_180--Hb_008289_050 Hb_001720_060 Hb_001720_060 Hb_004195_180--Hb_001720_060 Hb_000390_260 Hb_000390_260 Hb_004195_180--Hb_000390_260 Hb_024621_030 Hb_024621_030 Hb_004195_180--Hb_024621_030 Hb_000976_070 Hb_000976_070 Hb_004195_180--Hb_000976_070 Hb_027472_230--Hb_008289_050 Hb_027472_230--Hb_001720_060 Hb_001832_020 Hb_001832_020 Hb_027472_230--Hb_001832_020 Hb_027472_230--Hb_000390_260 Hb_001085_100 Hb_001085_100 Hb_027472_230--Hb_001085_100 Hb_008289_050--Hb_001720_060 Hb_003398_030 Hb_003398_030 Hb_008289_050--Hb_003398_030 Hb_008289_050--Hb_001085_100 Hb_000077_240 Hb_000077_240 Hb_008289_050--Hb_000077_240 Hb_002253_060 Hb_002253_060 Hb_001720_060--Hb_002253_060 Hb_003435_060 Hb_003435_060 Hb_001720_060--Hb_003435_060 Hb_004460_050 Hb_004460_050 Hb_001720_060--Hb_004460_050 Hb_000390_260--Hb_024621_030 Hb_003992_250 Hb_003992_250 Hb_000390_260--Hb_003992_250 Hb_000975_150 Hb_000975_150 Hb_000390_260--Hb_000975_150 Hb_002006_140 Hb_002006_140 Hb_000390_260--Hb_002006_140 Hb_004800_170 Hb_004800_170 Hb_024621_030--Hb_004800_170 Hb_000699_170 Hb_000699_170 Hb_024621_030--Hb_000699_170 Hb_001045_050 Hb_001045_050 Hb_024621_030--Hb_001045_050 Hb_024621_030--Hb_000975_150 Hb_024621_030--Hb_003435_060 Hb_000614_340 Hb_000614_340 Hb_000976_070--Hb_000614_340 Hb_000039_070 Hb_000039_070 Hb_000976_070--Hb_000039_070 Hb_000976_070--Hb_003992_250 Hb_006446_070 Hb_006446_070 Hb_000976_070--Hb_006446_070 Hb_062904_010 Hb_062904_010 Hb_000976_070--Hb_062904_010 Hb_000412_030 Hb_000412_030 Hb_000976_070--Hb_000412_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.862705 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.767919 0.907553 0 2.38977 0

CAGE analysis