Hb_006446_070

Information

Type -
Description -
Location Contig6446: 96292-106938
Sequence    

Annotation

kegg
ID tcc:TCM_019792
description Zinc-binding dehydrogenase family protein
nr
ID XP_007033632.1
description Zinc-binding dehydrogenase family protein [Theobroma cacao]
swissprot
ID Q9SLN8
description 2-alkenal reductase (NADP(+)-dependent) OS=Nicotiana tabacum GN=DBR PE=1 SV=1
trembl
ID A0A061EIS4
description Zinc-binding dehydrogenase family protein OS=Theobroma cacao GN=TCM_019792 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006446_070 0.0 - - Zinc-binding dehydrogenase family protein [Theobroma cacao]
2 Hb_000614_340 0.0801898598 - - Salutaridinol 7-O-acetyltransferase, putative [Ricinus communis]
3 Hb_176138_010 0.1365215767 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
4 Hb_006810_080 0.1365320222 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
5 Hb_006124_010 0.1365368047 - - -
6 Hb_022693_100 0.1368404224 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_000866_480 0.1369131855 - - -
8 Hb_161981_020 0.137002128 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_021931_030 0.1375779805 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
10 Hb_009230_030 0.1379255915 - - -
11 Hb_000526_130 0.1391863616 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
12 Hb_003724_030 0.139580863 - - -
13 Hb_110822_020 0.1397524482 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
14 Hb_002081_250 0.139873769 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
15 Hb_170761_010 0.1398957173 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
16 Hb_001504_290 0.1398969871 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
17 Hb_000286_250 0.1400261541 desease resistance Gene Name: NB-ARC -
18 Hb_002200_010 0.1404188807 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
19 Hb_000057_030 0.1405336663 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000107_460 0.141560306 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]

Gene co-expression network

sample Hb_006446_070 Hb_006446_070 Hb_000614_340 Hb_000614_340 Hb_006446_070--Hb_000614_340 Hb_176138_010 Hb_176138_010 Hb_006446_070--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_006446_070--Hb_006810_080 Hb_006124_010 Hb_006124_010 Hb_006446_070--Hb_006124_010 Hb_022693_100 Hb_022693_100 Hb_006446_070--Hb_022693_100 Hb_000866_480 Hb_000866_480 Hb_006446_070--Hb_000866_480 Hb_000526_130 Hb_000526_130 Hb_000614_340--Hb_000526_130 Hb_009230_030 Hb_009230_030 Hb_000614_340--Hb_009230_030 Hb_003724_030 Hb_003724_030 Hb_000614_340--Hb_003724_030 Hb_001504_290 Hb_001504_290 Hb_000614_340--Hb_001504_290 Hb_000614_340--Hb_000866_480 Hb_176138_010--Hb_006810_080 Hb_176138_010--Hb_022693_100 Hb_176138_010--Hb_000866_480 Hb_176138_010--Hb_006124_010 Hb_176138_010--Hb_009230_030 Hb_161981_020 Hb_161981_020 Hb_176138_010--Hb_161981_020 Hb_006810_080--Hb_022693_100 Hb_006810_080--Hb_000866_480 Hb_006810_080--Hb_006124_010 Hb_006810_080--Hb_009230_030 Hb_006810_080--Hb_161981_020 Hb_006124_010--Hb_161981_020 Hb_021931_030 Hb_021931_030 Hb_006124_010--Hb_021931_030 Hb_006124_010--Hb_022693_100 Hb_006124_010--Hb_000866_480 Hb_022693_100--Hb_000866_480 Hb_022693_100--Hb_009230_030 Hb_022693_100--Hb_000526_130 Hb_000866_480--Hb_009230_030 Hb_000866_480--Hb_000526_130 Hb_000866_480--Hb_003724_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00972129 0.205558 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0220905 0 0 0.629165 0

CAGE analysis