Hb_006907_120

Information

Type -
Description -
Location Contig6907: 73819-75363
Sequence    

Annotation

kegg
ID pmum:103327233
description uncharacterized LOC103327233
nr
ID XP_008227745.1
description PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
swissprot
ID -
description -
trembl
ID A0A061FC08
description Uncharacterized protein OS=Theobroma cacao GN=TCM_033523 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_120 0.0 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
2 Hb_007105_010 0.1272707574 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
3 Hb_000077_240 0.163608797 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
4 Hb_003398_030 0.1848767425 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
5 Hb_001189_060 0.2338616211 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_000186_210 0.2431022477 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
7 Hb_010288_040 0.2679585524 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
8 Hb_005779_050 0.2709525812 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
9 Hb_002063_030 0.2833181362 - - -
10 Hb_109268_010 0.2858941394 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
11 Hb_001902_150 0.2982104295 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
12 Hb_003018_070 0.2999403012 - - SAUR family protein, partial [Theobroma cacao]
13 Hb_001863_440 0.3006074888 - - Nodulin-26, putative [Ricinus communis]
14 Hb_008864_070 0.3020227883 - - PREDICTED: uncharacterized protein LOC105803851 [Gossypium raimondii]
15 Hb_128051_010 0.3060559203 - - -
16 Hb_111347_010 0.3201393316 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
17 Hb_001022_060 0.325281873 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
18 Hb_003100_010 0.3305755345 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
19 Hb_007951_130 0.3308875004 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
20 Hb_002180_010 0.3318954646 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_006907_120 Hb_006907_120 Hb_007105_010 Hb_007105_010 Hb_006907_120--Hb_007105_010 Hb_000077_240 Hb_000077_240 Hb_006907_120--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_006907_120--Hb_003398_030 Hb_001189_060 Hb_001189_060 Hb_006907_120--Hb_001189_060 Hb_000186_210 Hb_000186_210 Hb_006907_120--Hb_000186_210 Hb_010288_040 Hb_010288_040 Hb_006907_120--Hb_010288_040 Hb_007105_010--Hb_001189_060 Hb_007105_010--Hb_010288_040 Hb_005779_050 Hb_005779_050 Hb_007105_010--Hb_005779_050 Hb_007105_010--Hb_000077_240 Hb_007105_010--Hb_003398_030 Hb_000077_240--Hb_003398_030 Hb_111347_010 Hb_111347_010 Hb_000077_240--Hb_111347_010 Hb_128051_010 Hb_128051_010 Hb_000077_240--Hb_128051_010 Hb_109268_010 Hb_109268_010 Hb_000077_240--Hb_109268_010 Hb_003398_030--Hb_111347_010 Hb_008289_050 Hb_008289_050 Hb_003398_030--Hb_008289_050 Hb_003398_030--Hb_128051_010 Hb_003018_070 Hb_003018_070 Hb_001189_060--Hb_003018_070 Hb_001189_060--Hb_000186_210 Hb_002063_030 Hb_002063_030 Hb_001189_060--Hb_002063_030 Hb_001902_150 Hb_001902_150 Hb_001189_060--Hb_001902_150 Hb_002316_040 Hb_002316_040 Hb_000186_210--Hb_002316_040 Hb_000186_210--Hb_003018_070 Hb_006096_010 Hb_006096_010 Hb_000186_210--Hb_006096_010 Hb_008864_070 Hb_008864_070 Hb_000186_210--Hb_008864_070 Hb_004732_010 Hb_004732_010 Hb_010288_040--Hb_004732_010 Hb_010288_040--Hb_005779_050 Hb_002180_010 Hb_002180_010 Hb_010288_040--Hb_002180_010 Hb_000454_060 Hb_000454_060 Hb_010288_040--Hb_000454_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0698831 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0416929 0.0327957 0 0.0131433 0

CAGE analysis