Hb_000454_060

Information

Type -
Description -
Location Contig454: 29383-31231
Sequence    

Annotation

kegg
ID tcc:TCM_006778
description hypothetical protein
nr
ID XP_007042024.1
description Uncharacterized protein TCM_006778 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DYR8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_006778 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_060 0.0 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
2 Hb_004525_060 0.1942050004 - - -
3 Hb_132998_020 0.2352627332 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
4 Hb_021888_050 0.2400692544 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
5 Hb_001504_120 0.2442776509 - - -
6 Hb_009780_080 0.2444476758 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000317_400 0.2448151615 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
8 Hb_000096_130 0.2471588476 - - hypothetical protein 23 [Hevea brasiliensis]
9 Hb_001865_080 0.2505068659 - - enoyl-CoA hydratase/isomerase family protein [Populus trichocarpa]
10 Hb_021888_120 0.2512308418 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
11 Hb_002374_380 0.2513904172 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
12 Hb_079268_010 0.2527772475 - - -
13 Hb_004230_040 0.2533806511 - - conserved hypothetical protein [Ricinus communis]
14 Hb_115241_010 0.2545154539 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
15 Hb_002267_080 0.2546250192 - - PREDICTED: uncharacterized protein LOC105635094 [Jatropha curcas]
16 Hb_000451_070 0.2555294767 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_000948_080 0.2558671636 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
18 Hb_000693_020 0.2589370005 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
19 Hb_002035_110 0.2595791472 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
20 Hb_002341_020 0.2598775458 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]

Gene co-expression network

sample Hb_000454_060 Hb_000454_060 Hb_004525_060 Hb_004525_060 Hb_000454_060--Hb_004525_060 Hb_132998_020 Hb_132998_020 Hb_000454_060--Hb_132998_020 Hb_021888_050 Hb_021888_050 Hb_000454_060--Hb_021888_050 Hb_001504_120 Hb_001504_120 Hb_000454_060--Hb_001504_120 Hb_009780_080 Hb_009780_080 Hb_000454_060--Hb_009780_080 Hb_000317_400 Hb_000317_400 Hb_000454_060--Hb_000317_400 Hb_004525_060--Hb_009780_080 Hb_000048_020 Hb_000048_020 Hb_004525_060--Hb_000048_020 Hb_010288_040 Hb_010288_040 Hb_004525_060--Hb_010288_040 Hb_096224_020 Hb_096224_020 Hb_004525_060--Hb_096224_020 Hb_004525_060--Hb_132998_020 Hb_079268_010 Hb_079268_010 Hb_132998_020--Hb_079268_010 Hb_003446_050 Hb_003446_050 Hb_132998_020--Hb_003446_050 Hb_132998_020--Hb_009780_080 Hb_005690_020 Hb_005690_020 Hb_132998_020--Hb_005690_020 Hb_000326_060 Hb_000326_060 Hb_132998_020--Hb_000326_060 Hb_115241_010 Hb_115241_010 Hb_021888_050--Hb_115241_010 Hb_000975_360 Hb_000975_360 Hb_021888_050--Hb_000975_360 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_138585_110 Hb_138585_110 Hb_001504_120--Hb_138585_110 Hb_080147_100 Hb_080147_100 Hb_001504_120--Hb_080147_100 Hb_000796_250 Hb_000796_250 Hb_001504_120--Hb_000796_250 Hb_001433_180 Hb_001433_180 Hb_001504_120--Hb_001433_180 Hb_000805_320 Hb_000805_320 Hb_001504_120--Hb_000805_320 Hb_002236_050 Hb_002236_050 Hb_001504_120--Hb_002236_050 Hb_001507_100 Hb_001507_100 Hb_009780_080--Hb_001507_100 Hb_008983_010 Hb_008983_010 Hb_009780_080--Hb_008983_010 Hb_009780_080--Hb_079268_010 Hb_089497_010 Hb_089497_010 Hb_009780_080--Hb_089497_010 Hb_009780_080--Hb_138585_110 Hb_000329_250 Hb_000329_250 Hb_000317_400--Hb_000329_250 Hb_000923_050 Hb_000923_050 Hb_000317_400--Hb_000923_050 Hb_001136_010 Hb_001136_010 Hb_000317_400--Hb_001136_010 Hb_000742_110 Hb_000742_110 Hb_000317_400--Hb_000742_110 Hb_001824_010 Hb_001824_010 Hb_000317_400--Hb_001824_010 Hb_001277_320 Hb_001277_320 Hb_000317_400--Hb_001277_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0290937 0.653987 0.202353 0.102817 0.113012 0.182556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.937038 0.736797 0.0952534 0.617624 0

CAGE analysis