Hb_080147_100

Information

Type -
Description -
Location Contig80147: 65830-75959
Sequence    

Annotation

kegg
ID tcc:TCM_037843
description Transducin/WD40 repeat-like superfamily protein
nr
ID XP_012076733.1
description PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
swissprot
ID C6L7U1
description Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2
trembl
ID A5C0M5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002973 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase lin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58817: 65828-70516 , PASA_asmbl_58818: 73685-74057 , PASA_asmbl_58819: 74098-75684
cDNA
(Sanger)
(ID:Location)		 022_I10.ab1: 70020-70507

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080147_100 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
2 Hb_000805_320 0.1699687746 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
3 Hb_105328_030 0.17761435 - - Putative retroelement [Oryza sativa Japonica Group]
4 Hb_003073_180 0.18730279 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
5 Hb_094437_060 0.1947479408 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
6 Hb_001504_120 0.1990330665 - - -
7 Hb_003750_030 0.2003701338 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
8 Hb_138710_010 0.2228674539 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
9 Hb_183623_010 0.2232272128 - - aldo-keto reductase, putative [Ricinus communis]
10 Hb_000157_130 0.2269270703 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X2 [Populus euphratica]
11 Hb_002798_010 0.2305487588 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
12 Hb_000645_110 0.2305973428 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
13 Hb_138585_110 0.235759168 - - -
14 Hb_105602_010 0.2418110629 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
15 Hb_007153_040 0.2441079536 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
16 Hb_001258_060 0.2482185458 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
17 Hb_000796_250 0.2483920102 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
18 Hb_000061_090 0.2492031193 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
19 Hb_014894_010 0.2499663391 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
20 Hb_002027_140 0.2539107284 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]

Gene co-expression network

sample Hb_080147_100 Hb_080147_100 Hb_000805_320 Hb_000805_320 Hb_080147_100--Hb_000805_320 Hb_105328_030 Hb_105328_030 Hb_080147_100--Hb_105328_030 Hb_003073_180 Hb_003073_180 Hb_080147_100--Hb_003073_180 Hb_094437_060 Hb_094437_060 Hb_080147_100--Hb_094437_060 Hb_001504_120 Hb_001504_120 Hb_080147_100--Hb_001504_120 Hb_003750_030 Hb_003750_030 Hb_080147_100--Hb_003750_030 Hb_000805_320--Hb_094437_060 Hb_004242_190 Hb_004242_190 Hb_000805_320--Hb_004242_190 Hb_105602_010 Hb_105602_010 Hb_000805_320--Hb_105602_010 Hb_001258_060 Hb_001258_060 Hb_000805_320--Hb_001258_060 Hb_000805_320--Hb_003073_180 Hb_014894_010 Hb_014894_010 Hb_000805_320--Hb_014894_010 Hb_105328_030--Hb_001504_120 Hb_031527_060 Hb_031527_060 Hb_105328_030--Hb_031527_060 Hb_006420_090 Hb_006420_090 Hb_105328_030--Hb_006420_090 Hb_000317_360 Hb_000317_360 Hb_105328_030--Hb_000317_360 Hb_004460_050 Hb_004460_050 Hb_105328_030--Hb_004460_050 Hb_002407_080 Hb_002407_080 Hb_003073_180--Hb_002407_080 Hb_000209_110 Hb_000209_110 Hb_003073_180--Hb_000209_110 Hb_003073_180--Hb_001258_060 Hb_006586_030 Hb_006586_030 Hb_003073_180--Hb_006586_030 Hb_138710_010 Hb_138710_010 Hb_094437_060--Hb_138710_010 Hb_001355_130 Hb_001355_130 Hb_094437_060--Hb_001355_130 Hb_005873_010 Hb_005873_010 Hb_094437_060--Hb_005873_010 Hb_007432_020 Hb_007432_020 Hb_094437_060--Hb_007432_020 Hb_094437_060--Hb_105602_010 Hb_138585_110 Hb_138585_110 Hb_001504_120--Hb_138585_110 Hb_000796_250 Hb_000796_250 Hb_001504_120--Hb_000796_250 Hb_001433_180 Hb_001433_180 Hb_001504_120--Hb_001433_180 Hb_001504_120--Hb_000805_320 Hb_002236_050 Hb_002236_050 Hb_001504_120--Hb_002236_050 Hb_004208_130 Hb_004208_130 Hb_003750_030--Hb_004208_130 Hb_003226_160 Hb_003226_160 Hb_003750_030--Hb_003226_160 Hb_000116_420 Hb_000116_420 Hb_003750_030--Hb_000116_420 Hb_002798_010 Hb_002798_010 Hb_003750_030--Hb_002798_010 Hb_000139_420 Hb_000139_420 Hb_003750_030--Hb_000139_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22704 3.14152 0.815953 0.45546 0.990647 1.45442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38881 7.53884 2.91935 18.5058 0.540796

CAGE analysis