Hb_000116_420

Information

Type -
Description -
Location Contig116: 351265-353969
Sequence    

Annotation

kegg
ID vvi:100243856
description TMT3; putative tonoplastic monosaccharide transporter
nr
ID XP_012065453.1
description PREDICTED: monosaccharide-sensing protein 2-like [Jatropha curcas]
swissprot
ID Q9SD00
description Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1
trembl
ID A0A067LGW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22417 PE=3 SV=1
Gene Ontology
ID GO:0016021
description monosaccharide-sensing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_420 0.0 - - PREDICTED: monosaccharide-sensing protein 2-like [Jatropha curcas]
2 Hb_000252_130 0.175827449 - - hypothetical protein POPTR_0011s17240g, partial [Populus trichocarpa]
3 Hb_000454_070 0.2103826627 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
4 Hb_029888_010 0.2191008187 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
5 Hb_003750_030 0.2201568981 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
6 Hb_165071_030 0.2265163225 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000116_430 0.2380031986 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
8 Hb_002820_010 0.238924092 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
9 Hb_005224_010 0.2401062627 - - glycine-rich protein [Bruguiera gymnorhiza]
10 Hb_000723_190 0.2416032417 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
11 Hb_010513_010 0.2420846966 - - -
12 Hb_024468_020 0.2448079357 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
13 Hb_007747_140 0.2451419174 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
14 Hb_002835_100 0.2466346631 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
15 Hb_001287_030 0.2469304558 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
16 Hb_002286_010 0.2480591573 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
17 Hb_002835_180 0.2507722043 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_082182_010 0.2535711247 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_003226_160 0.2539816679 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
20 Hb_000200_290 0.2542074487 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_420 Hb_000116_420 Hb_000252_130 Hb_000252_130 Hb_000116_420--Hb_000252_130 Hb_000454_070 Hb_000454_070 Hb_000116_420--Hb_000454_070 Hb_029888_010 Hb_029888_010 Hb_000116_420--Hb_029888_010 Hb_003750_030 Hb_003750_030 Hb_000116_420--Hb_003750_030 Hb_165071_030 Hb_165071_030 Hb_000116_420--Hb_165071_030 Hb_000116_430 Hb_000116_430 Hb_000116_420--Hb_000116_430 Hb_002820_010 Hb_002820_010 Hb_000252_130--Hb_002820_010 Hb_000723_190 Hb_000723_190 Hb_000252_130--Hb_000723_190 Hb_003642_050 Hb_003642_050 Hb_000252_130--Hb_003642_050 Hb_005224_010 Hb_005224_010 Hb_000252_130--Hb_005224_010 Hb_001894_170 Hb_001894_170 Hb_000252_130--Hb_001894_170 Hb_000432_050 Hb_000432_050 Hb_000454_070--Hb_000432_050 Hb_000200_290 Hb_000200_290 Hb_000454_070--Hb_000200_290 Hb_048476_050 Hb_048476_050 Hb_000454_070--Hb_048476_050 Hb_005000_070 Hb_005000_070 Hb_000454_070--Hb_005000_070 Hb_001538_140 Hb_001538_140 Hb_000454_070--Hb_001538_140 Hb_000363_200 Hb_000363_200 Hb_000454_070--Hb_000363_200 Hb_029888_010--Hb_000116_430 Hb_130279_010 Hb_130279_010 Hb_029888_010--Hb_130279_010 Hb_001511_070 Hb_001511_070 Hb_029888_010--Hb_001511_070 Hb_009455_020 Hb_009455_020 Hb_029888_010--Hb_009455_020 Hb_070256_010 Hb_070256_010 Hb_029888_010--Hb_070256_010 Hb_000856_150 Hb_000856_150 Hb_029888_010--Hb_000856_150 Hb_080147_100 Hb_080147_100 Hb_003750_030--Hb_080147_100 Hb_004208_130 Hb_004208_130 Hb_003750_030--Hb_004208_130 Hb_003226_160 Hb_003226_160 Hb_003750_030--Hb_003226_160 Hb_002798_010 Hb_002798_010 Hb_003750_030--Hb_002798_010 Hb_000139_420 Hb_000139_420 Hb_003750_030--Hb_000139_420 Hb_010513_010 Hb_010513_010 Hb_165071_030--Hb_010513_010 Hb_012979_020 Hb_012979_020 Hb_165071_030--Hb_012979_020 Hb_165071_030--Hb_000252_130 Hb_011484_010 Hb_011484_010 Hb_165071_030--Hb_011484_010 Hb_165071_030--Hb_002820_010 Hb_042202_030 Hb_042202_030 Hb_000116_430--Hb_042202_030 Hb_001414_030 Hb_001414_030 Hb_000116_430--Hb_001414_030 Hb_000020_120 Hb_000020_120 Hb_000116_430--Hb_000020_120 Hb_000116_430--Hb_001511_070 Hb_000116_430--Hb_000856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0673584 0.0190847 0.0289403 0 0.00963572 0.00922473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0437299 0.137633 0.130597 0.116327 0.0363888

CAGE analysis