Hb_002798_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig2798: 17985-18829
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03490g
description POPTRDRAFT_248113; hypothetical protein
nr
ID XP_012089481.1
description PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JLQ9
description MYB family protein OS=Jatropha curcas GN=JCGZ_23541 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002798_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
2 Hb_006922_060 0.195855863 - - calcineurin B, putative [Ricinus communis]
3 Hb_005333_150 0.2072543269 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
4 Hb_003226_160 0.2103078304 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
5 Hb_094437_060 0.2150471076 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
6 Hb_003750_030 0.2297754469 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
7 Hb_002236_050 0.2302492712 - - -
8 Hb_080147_100 0.2305487588 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
9 Hb_000805_320 0.2371195898 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
10 Hb_002374_380 0.2392516847 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
11 Hb_007432_020 0.2396256251 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
12 Hb_008948_120 0.2538859628 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
13 Hb_000796_250 0.2549438706 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
14 Hb_138710_010 0.2552508261 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
15 Hb_105602_010 0.2559859126 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
16 Hb_011861_120 0.260619496 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
17 Hb_000692_010 0.2615361667 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
18 Hb_004136_030 0.2643654247 - - -
19 Hb_001387_020 0.266481975 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
20 Hb_009780_080 0.269526784 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002798_010 Hb_002798_010 Hb_006922_060 Hb_006922_060 Hb_002798_010--Hb_006922_060 Hb_005333_150 Hb_005333_150 Hb_002798_010--Hb_005333_150 Hb_003226_160 Hb_003226_160 Hb_002798_010--Hb_003226_160 Hb_094437_060 Hb_094437_060 Hb_002798_010--Hb_094437_060 Hb_003750_030 Hb_003750_030 Hb_002798_010--Hb_003750_030 Hb_002236_050 Hb_002236_050 Hb_002798_010--Hb_002236_050 Hb_006922_060--Hb_005333_150 Hb_009780_080 Hb_009780_080 Hb_006922_060--Hb_009780_080 Hb_002180_010 Hb_002180_010 Hb_006922_060--Hb_002180_010 Hb_079268_010 Hb_079268_010 Hb_006922_060--Hb_079268_010 Hb_006922_060--Hb_003226_160 Hb_005333_150--Hb_003226_160 Hb_000243_140 Hb_000243_140 Hb_005333_150--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_005333_150--Hb_007451_020 Hb_001117_070 Hb_001117_070 Hb_005333_150--Hb_001117_070 Hb_002896_080 Hb_002896_080 Hb_003226_160--Hb_002896_080 Hb_003226_160--Hb_000243_140 Hb_001863_090 Hb_001863_090 Hb_003226_160--Hb_001863_090 Hb_000907_170 Hb_000907_170 Hb_003226_160--Hb_000907_170 Hb_000805_320 Hb_000805_320 Hb_094437_060--Hb_000805_320 Hb_138710_010 Hb_138710_010 Hb_094437_060--Hb_138710_010 Hb_001355_130 Hb_001355_130 Hb_094437_060--Hb_001355_130 Hb_005873_010 Hb_005873_010 Hb_094437_060--Hb_005873_010 Hb_007432_020 Hb_007432_020 Hb_094437_060--Hb_007432_020 Hb_105602_010 Hb_105602_010 Hb_094437_060--Hb_105602_010 Hb_080147_100 Hb_080147_100 Hb_003750_030--Hb_080147_100 Hb_004208_130 Hb_004208_130 Hb_003750_030--Hb_004208_130 Hb_003750_030--Hb_003226_160 Hb_000116_420 Hb_000116_420 Hb_003750_030--Hb_000116_420 Hb_000139_420 Hb_000139_420 Hb_003750_030--Hb_000139_420 Hb_008948_120 Hb_008948_120 Hb_002236_050--Hb_008948_120 Hb_011861_120 Hb_011861_120 Hb_002236_050--Hb_011861_120 Hb_000555_100 Hb_000555_100 Hb_002236_050--Hb_000555_100 Hb_000402_210 Hb_000402_210 Hb_002236_050--Hb_000402_210 Hb_006970_080 Hb_006970_080 Hb_002236_050--Hb_006970_080 Hb_004064_010 Hb_004064_010 Hb_002236_050--Hb_004064_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65367 1.36914 0.688353 0.458567 0.37133 0.489569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.30256 6.48213 0.498492 9.08989 0.966195

CAGE analysis