Hb_006970_080

Information

Type -
Description -
Location Contig6970: 76799-80532
Sequence    

Annotation

kegg
ID rcu:RCOM_1576970
description transcription factor, putative (EC:1.14.11.16)
nr
ID XP_012092780.1
description PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
swissprot
ID Q8RWR1
description Putative lysine-specific demethylase JMJD5 OS=Arabidopsis thaliana GN=JMJD5 PE=2 SV=1
trembl
ID B9RI82
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1576970 PE=4 SV=1
Gene Ontology
ID GO:0016491
description lysine-specific demethylase jmjd5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_080 0.0 - - PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
2 Hb_000331_180 0.155924971 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
3 Hb_048937_060 0.1580781971 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
4 Hb_000525_020 0.1604458797 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_002236_050 0.1637501627 - - -
6 Hb_001369_300 0.1640978384 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
7 Hb_004734_040 0.1668503594 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
8 Hb_000331_430 0.1677035909 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
9 Hb_009411_050 0.1681441055 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
10 Hb_008173_110 0.1686626464 - - DNA binding protein, putative [Ricinus communis]
11 Hb_007894_060 0.1694058293 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
12 Hb_002445_100 0.1695529287 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
13 Hb_002027_350 0.1697456813 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
14 Hb_000903_060 0.1707820606 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
15 Hb_005365_030 0.1709199192 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
16 Hb_011618_060 0.1711676921 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
17 Hb_001449_010 0.1716585651 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000555_100 0.1718253205 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
19 Hb_111036_010 0.1720437548 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
20 Hb_000270_470 0.1722087907 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006970_080 Hb_006970_080 Hb_000331_180 Hb_000331_180 Hb_006970_080--Hb_000331_180 Hb_048937_060 Hb_048937_060 Hb_006970_080--Hb_048937_060 Hb_000525_020 Hb_000525_020 Hb_006970_080--Hb_000525_020 Hb_002236_050 Hb_002236_050 Hb_006970_080--Hb_002236_050 Hb_001369_300 Hb_001369_300 Hb_006970_080--Hb_001369_300 Hb_004734_040 Hb_004734_040 Hb_006970_080--Hb_004734_040 Hb_000783_010 Hb_000783_010 Hb_000331_180--Hb_000783_010 Hb_000034_070 Hb_000034_070 Hb_000331_180--Hb_000034_070 Hb_032808_010 Hb_032808_010 Hb_000331_180--Hb_032808_010 Hb_001366_370 Hb_001366_370 Hb_000331_180--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_000331_180--Hb_000510_300 Hb_002445_060 Hb_002445_060 Hb_000331_180--Hb_002445_060 Hb_001348_170 Hb_001348_170 Hb_048937_060--Hb_001348_170 Hb_003678_020 Hb_003678_020 Hb_048937_060--Hb_003678_020 Hb_121729_010 Hb_121729_010 Hb_048937_060--Hb_121729_010 Hb_000665_140 Hb_000665_140 Hb_048937_060--Hb_000665_140 Hb_014720_110 Hb_014720_110 Hb_048937_060--Hb_014720_110 Hb_048937_060--Hb_000331_180 Hb_000331_470 Hb_000331_470 Hb_000525_020--Hb_000331_470 Hb_004871_020 Hb_004871_020 Hb_000525_020--Hb_004871_020 Hb_091433_020 Hb_091433_020 Hb_000525_020--Hb_091433_020 Hb_001863_430 Hb_001863_430 Hb_000525_020--Hb_001863_430 Hb_000684_270 Hb_000684_270 Hb_000525_020--Hb_000684_270 Hb_003787_010 Hb_003787_010 Hb_000525_020--Hb_003787_010 Hb_008948_120 Hb_008948_120 Hb_002236_050--Hb_008948_120 Hb_011861_120 Hb_011861_120 Hb_002236_050--Hb_011861_120 Hb_000555_100 Hb_000555_100 Hb_002236_050--Hb_000555_100 Hb_000402_210 Hb_000402_210 Hb_002236_050--Hb_000402_210 Hb_004064_010 Hb_004064_010 Hb_002236_050--Hb_004064_010 Hb_001660_100 Hb_001660_100 Hb_001369_300--Hb_001660_100 Hb_001357_310 Hb_001357_310 Hb_001369_300--Hb_001357_310 Hb_000510_340 Hb_000510_340 Hb_001369_300--Hb_000510_340 Hb_000402_150 Hb_000402_150 Hb_001369_300--Hb_000402_150 Hb_005271_040 Hb_005271_040 Hb_001369_300--Hb_005271_040 Hb_000875_080 Hb_000875_080 Hb_001369_300--Hb_000875_080 Hb_005391_040 Hb_005391_040 Hb_004734_040--Hb_005391_040 Hb_000903_060 Hb_000903_060 Hb_004734_040--Hb_000903_060 Hb_001653_020 Hb_001653_020 Hb_004734_040--Hb_001653_020 Hb_007894_060 Hb_007894_060 Hb_004734_040--Hb_007894_060 Hb_001301_110 Hb_001301_110 Hb_004734_040--Hb_001301_110 Hb_000665_050 Hb_000665_050 Hb_004734_040--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.896671 0.603865 1.13936 0.419214 0.16386 0.53406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18048 1.17449 0.460138 1.37555 0.284552

CAGE analysis