Hb_008948_120

Information

Type -
Description -
Location Contig8948: 133812-137451
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06900g
description POPTRDRAFT_819093; hypothetical protein
nr
ID XP_012078785.1
description PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID O48782
description Heme oxygenase 1, chloroplastic OS=Arabidopsis thaliana GN=HO1 PE=1 SV=2
trembl
ID A0A067KKR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13329 PE=4 SV=1
Gene Ontology
ID GO:0004392
description heme oxygenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61734: 133841-134806 , PASA_asmbl_61735: 133841-137475
cDNA
(Sanger)
(ID:Location)		 007_C09.ab1: 133885-134585 , 012_B17.ab1: 133885-136240 , 020_I22.ab1: 133885-136275 , 028_K18.ab1: 133885-134473 , 038_C18.ab1: 133885-134589

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_120 0.0 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
2 Hb_002236_050 0.1357494214 - - -
3 Hb_017491_020 0.1520586168 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
4 Hb_000347_450 0.1561346989 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
5 Hb_002307_310 0.1605501337 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
6 Hb_168893_020 0.1611294451 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
7 Hb_000210_060 0.1628711995 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
8 Hb_000012_410 0.1648097472 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
9 Hb_016522_010 0.1687963311 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
10 Hb_082741_010 0.1689819066 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
11 Hb_000979_110 0.1704927133 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
12 Hb_010174_150 0.1714182384 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_004453_080 0.1728694519 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
14 Hb_011224_160 0.173342455 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
15 Hb_000555_100 0.1739457748 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
16 Hb_000694_060 0.1752683946 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
17 Hb_000088_270 0.1762117044 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
18 Hb_001433_110 0.1793741556 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
19 Hb_000723_170 0.1803957577 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
20 Hb_000739_300 0.1806398244 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]

Gene co-expression network

sample Hb_008948_120 Hb_008948_120 Hb_002236_050 Hb_002236_050 Hb_008948_120--Hb_002236_050 Hb_017491_020 Hb_017491_020 Hb_008948_120--Hb_017491_020 Hb_000347_450 Hb_000347_450 Hb_008948_120--Hb_000347_450 Hb_002307_310 Hb_002307_310 Hb_008948_120--Hb_002307_310 Hb_168893_020 Hb_168893_020 Hb_008948_120--Hb_168893_020 Hb_000210_060 Hb_000210_060 Hb_008948_120--Hb_000210_060 Hb_011861_120 Hb_011861_120 Hb_002236_050--Hb_011861_120 Hb_000555_100 Hb_000555_100 Hb_002236_050--Hb_000555_100 Hb_000402_210 Hb_000402_210 Hb_002236_050--Hb_000402_210 Hb_006970_080 Hb_006970_080 Hb_002236_050--Hb_006970_080 Hb_004064_010 Hb_004064_010 Hb_002236_050--Hb_004064_010 Hb_000077_180 Hb_000077_180 Hb_017491_020--Hb_000077_180 Hb_000136_350 Hb_000136_350 Hb_017491_020--Hb_000136_350 Hb_186982_040 Hb_186982_040 Hb_017491_020--Hb_186982_040 Hb_000377_120 Hb_000377_120 Hb_017491_020--Hb_000377_120 Hb_000163_050 Hb_000163_050 Hb_017491_020--Hb_000163_050 Hb_017491_020--Hb_000210_060 Hb_011224_160 Hb_011224_160 Hb_000347_450--Hb_011224_160 Hb_000088_270 Hb_000088_270 Hb_000347_450--Hb_000088_270 Hb_000684_040 Hb_000684_040 Hb_000347_450--Hb_000684_040 Hb_050847_050 Hb_050847_050 Hb_000347_450--Hb_050847_050 Hb_010775_040 Hb_010775_040 Hb_000347_450--Hb_010775_040 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_004712_210 Hb_004712_210 Hb_002307_310--Hb_004712_210 Hb_022318_020 Hb_022318_020 Hb_002307_310--Hb_022318_020 Hb_002701_010 Hb_002701_010 Hb_002307_310--Hb_002701_010 Hb_015183_060 Hb_015183_060 Hb_002307_310--Hb_015183_060 Hb_001604_150 Hb_001604_150 Hb_002307_310--Hb_001604_150 Hb_006355_040 Hb_006355_040 Hb_002307_310--Hb_006355_040 Hb_006538_090 Hb_006538_090 Hb_168893_020--Hb_006538_090 Hb_168893_020--Hb_000210_060 Hb_168893_020--Hb_000555_100 Hb_001369_250 Hb_001369_250 Hb_168893_020--Hb_001369_250 Hb_002477_290 Hb_002477_290 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_000210_060--Hb_005276_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0384 29.6102 30.7885 26.0147 5.91216 9.07523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3919 70.9473 11.7645 82.3177 32.3408

CAGE analysis