Hb_002307_310

Information

Type -
Description -
Location Contig2307: 306639-314748
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00440g
description POPTRDRAFT_718123; hypothetical protein
nr
ID XP_012081923.1
description PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
swissprot
ID Q4LDF9
description Outer envelope pore protein 37, chloroplastic OS=Pisum sativum GN=OEP37 PE=1 SV=1
trembl
ID A0A067KBA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19268 PE=4 SV=1
Gene Ontology
ID GO:0005739
description outer envelope pore protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24261: 306576-307271 , PASA_asmbl_24262: 308198-308559 , PASA_asmbl_24264: 311305-314346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_310 0.0 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
2 Hb_004712_210 0.1070109606 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
3 Hb_022318_020 0.1088851843 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
4 Hb_002701_010 0.1097698108 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_015183_060 0.1138897378 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
6 Hb_001604_150 0.1139144688 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
7 Hb_006355_040 0.1199724462 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
8 Hb_163256_020 0.1223181591 - - fructokinase [Manihot esculenta]
9 Hb_000035_480 0.1228546332 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
10 Hb_002631_180 0.1231623156 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
11 Hb_004005_020 0.1253180671 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_001016_100 0.1286046213 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
13 Hb_002303_020 0.130454663 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
14 Hb_000072_200 0.1306807072 - - PREDICTED: myb-like protein X [Jatropha curcas]
15 Hb_000329_760 0.1311944294 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
16 Hb_004586_420 0.1312093611 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
17 Hb_014720_110 0.1317098992 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
18 Hb_000684_040 0.133063471 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
19 Hb_005843_140 0.1338820433 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
20 Hb_002232_060 0.1342290252 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_002307_310 Hb_002307_310 Hb_004712_210 Hb_004712_210 Hb_002307_310--Hb_004712_210 Hb_022318_020 Hb_022318_020 Hb_002307_310--Hb_022318_020 Hb_002701_010 Hb_002701_010 Hb_002307_310--Hb_002701_010 Hb_015183_060 Hb_015183_060 Hb_002307_310--Hb_015183_060 Hb_001604_150 Hb_001604_150 Hb_002307_310--Hb_001604_150 Hb_006355_040 Hb_006355_040 Hb_002307_310--Hb_006355_040 Hb_002534_100 Hb_002534_100 Hb_004712_210--Hb_002534_100 Hb_002303_020 Hb_002303_020 Hb_004712_210--Hb_002303_020 Hb_010578_080 Hb_010578_080 Hb_004712_210--Hb_010578_080 Hb_044653_040 Hb_044653_040 Hb_004712_210--Hb_044653_040 Hb_009296_070 Hb_009296_070 Hb_004712_210--Hb_009296_070 Hb_002173_070 Hb_002173_070 Hb_004712_210--Hb_002173_070 Hb_163256_020 Hb_163256_020 Hb_022318_020--Hb_163256_020 Hb_022318_020--Hb_002701_010 Hb_006256_030 Hb_006256_030 Hb_022318_020--Hb_006256_030 Hb_000448_050 Hb_000448_050 Hb_022318_020--Hb_000448_050 Hb_001648_030 Hb_001648_030 Hb_022318_020--Hb_001648_030 Hb_001016_100 Hb_001016_100 Hb_022318_020--Hb_001016_100 Hb_002701_010--Hb_163256_020 Hb_002701_010--Hb_006355_040 Hb_000424_200 Hb_000424_200 Hb_002701_010--Hb_000424_200 Hb_000099_150 Hb_000099_150 Hb_002701_010--Hb_000099_150 Hb_008232_010 Hb_008232_010 Hb_015183_060--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_015183_060--Hb_000982_080 Hb_000673_020 Hb_000673_020 Hb_015183_060--Hb_000673_020 Hb_002016_080 Hb_002016_080 Hb_015183_060--Hb_002016_080 Hb_001892_070 Hb_001892_070 Hb_015183_060--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_015183_060--Hb_000920_200 Hb_031910_020 Hb_031910_020 Hb_001604_150--Hb_031910_020 Hb_002631_180 Hb_002631_180 Hb_001604_150--Hb_002631_180 Hb_000215_360 Hb_000215_360 Hb_001604_150--Hb_000215_360 Hb_000009_050 Hb_000009_050 Hb_001604_150--Hb_000009_050 Hb_004429_020 Hb_004429_020 Hb_001604_150--Hb_004429_020 Hb_001718_030 Hb_001718_030 Hb_006355_040--Hb_001718_030 Hb_005843_140 Hb_005843_140 Hb_006355_040--Hb_005843_140 Hb_001188_030 Hb_001188_030 Hb_006355_040--Hb_001188_030 Hb_002968_040 Hb_002968_040 Hb_006355_040--Hb_002968_040 Hb_003669_020 Hb_003669_020 Hb_006355_040--Hb_003669_020 Hb_006198_070 Hb_006198_070 Hb_006355_040--Hb_006198_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08346 4.48102 7.14176 4.66107 2.61653 2.15362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21054 12.4344 6.82597 10.4997 7.03186

CAGE analysis