Hb_000215_360

Information

Type -
Description -
Location Contig215: 269642-288299
Sequence    

Annotation

kegg
ID tcc:TCM_037740
description Uncharacterized protein isoform 1
nr
ID XP_007012962.1
description Uncharacterized protein isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GM18
description Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_037740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22215: 285770-286753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_360 0.0 - - Uncharacterized protein isoform 2 [Theobroma cacao]
2 Hb_042474_010 0.1013757429 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
3 Hb_000190_090 0.1136278887 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
4 Hb_016347_010 0.1141284962 - - protein transporter, putative [Ricinus communis]
5 Hb_001728_140 0.1157281835 - - -
6 Hb_073171_100 0.118644237 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
7 Hb_001691_200 0.1203383775 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
8 Hb_000535_050 0.1225901954 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
9 Hb_012760_110 0.123981161 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
10 Hb_000001_130 0.1244157081 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_000922_250 0.1245199236 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_011224_160 0.1256293066 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
13 Hb_006916_110 0.126654881 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
14 Hb_084670_010 0.1273037805 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000204_070 0.1275767752 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
16 Hb_000684_040 0.1280045381 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
17 Hb_005305_050 0.1294943653 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
18 Hb_000347_450 0.1301235309 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
19 Hb_000251_030 0.1316574638 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
20 Hb_094970_010 0.1320970981 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000215_360 Hb_000215_360 Hb_042474_010 Hb_042474_010 Hb_000215_360--Hb_042474_010 Hb_000190_090 Hb_000190_090 Hb_000215_360--Hb_000190_090 Hb_016347_010 Hb_016347_010 Hb_000215_360--Hb_016347_010 Hb_001728_140 Hb_001728_140 Hb_000215_360--Hb_001728_140 Hb_073171_100 Hb_073171_100 Hb_000215_360--Hb_073171_100 Hb_001691_200 Hb_001691_200 Hb_000215_360--Hb_001691_200 Hb_012760_040 Hb_012760_040 Hb_042474_010--Hb_012760_040 Hb_042474_010--Hb_000190_090 Hb_004880_150 Hb_004880_150 Hb_042474_010--Hb_004880_150 Hb_001221_020 Hb_001221_020 Hb_042474_010--Hb_001221_020 Hb_006916_110 Hb_006916_110 Hb_042474_010--Hb_006916_110 Hb_042474_010--Hb_016347_010 Hb_012022_080 Hb_012022_080 Hb_000190_090--Hb_012022_080 Hb_004096_110 Hb_004096_110 Hb_000190_090--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_000190_090--Hb_011224_160 Hb_021576_010 Hb_021576_010 Hb_000190_090--Hb_021576_010 Hb_000190_090--Hb_016347_010 Hb_000363_040 Hb_000363_040 Hb_016347_010--Hb_000363_040 Hb_000327_250 Hb_000327_250 Hb_016347_010--Hb_000327_250 Hb_004677_050 Hb_004677_050 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030 Hb_016347_010--Hb_021576_010 Hb_000548_070 Hb_000548_070 Hb_001728_140--Hb_000548_070 Hb_009615_060 Hb_009615_060 Hb_001728_140--Hb_009615_060 Hb_001493_150 Hb_001493_150 Hb_001728_140--Hb_001493_150 Hb_000251_030 Hb_000251_030 Hb_001728_140--Hb_000251_030 Hb_001510_020 Hb_001510_020 Hb_001728_140--Hb_001510_020 Hb_002477_290 Hb_002477_290 Hb_001728_140--Hb_002477_290 Hb_006501_160 Hb_006501_160 Hb_073171_100--Hb_006501_160 Hb_000347_450 Hb_000347_450 Hb_073171_100--Hb_000347_450 Hb_073171_100--Hb_011224_160 Hb_001731_030 Hb_001731_030 Hb_073171_100--Hb_001731_030 Hb_001019_050 Hb_001019_050 Hb_073171_100--Hb_001019_050 Hb_073171_100--Hb_016347_010 Hb_002631_210 Hb_002631_210 Hb_001691_200--Hb_002631_210 Hb_004208_050 Hb_004208_050 Hb_001691_200--Hb_004208_050 Hb_011883_020 Hb_011883_020 Hb_001691_200--Hb_011883_020 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.145563 0.777525 0.49044 0.636565 0.265366 0.372813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372921 0.823371 0.720594 1.59155 1.06626

CAGE analysis