Hb_001731_030

Information

Type -
Description -
Location Contig1731: 13962-24444
Sequence    

Annotation

kegg
ID obr:102702697
description E3 ubiquitin-protein ligase RHF2A-like
nr
ID XP_012443674.1
description PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
swissprot
ID Q9ZT42
description E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1
trembl
ID A0A0D2RW87
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G081600 PE=4 SV=1
Gene Ontology
ID GO:0044248
description e3 ubiquitin-protein ligase rhf2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16490: 17541-17813 , PASA_asmbl_16491: 19517-24375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001731_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
2 Hb_001493_150 0.0932402874 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
3 Hb_000808_170 0.0932696817 - - protein disulfide isomerase, putative [Ricinus communis]
4 Hb_028960_030 0.1009501483 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
5 Hb_073171_100 0.102680061 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
6 Hb_000159_120 0.1062887922 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
7 Hb_011224_160 0.1076596591 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
8 Hb_179924_010 0.1089380095 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
9 Hb_003683_010 0.1140146321 - - longevity assurance factor, putative [Ricinus communis]
10 Hb_000190_090 0.1147783516 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
11 Hb_012022_080 0.1166813605 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000580_120 0.1170081806 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
13 Hb_001168_050 0.1176158715 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
14 Hb_003207_010 0.118089534 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
15 Hb_000209_100 0.1203785321 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
16 Hb_107298_010 0.1217422315 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
17 Hb_007441_280 0.1225359025 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
18 Hb_008226_070 0.1229260374 - - PREDICTED: expansin-A8 [Jatropha curcas]
19 Hb_002301_100 0.1230096139 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
20 Hb_003777_290 0.1265647267 - - polypyrimidine tract binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001731_030 Hb_001731_030 Hb_001493_150 Hb_001493_150 Hb_001731_030--Hb_001493_150 Hb_000808_170 Hb_000808_170 Hb_001731_030--Hb_000808_170 Hb_028960_030 Hb_028960_030 Hb_001731_030--Hb_028960_030 Hb_073171_100 Hb_073171_100 Hb_001731_030--Hb_073171_100 Hb_000159_120 Hb_000159_120 Hb_001731_030--Hb_000159_120 Hb_011224_160 Hb_011224_160 Hb_001731_030--Hb_011224_160 Hb_009615_060 Hb_009615_060 Hb_001493_150--Hb_009615_060 Hb_002301_100 Hb_002301_100 Hb_001493_150--Hb_002301_100 Hb_012393_030 Hb_012393_030 Hb_001493_150--Hb_012393_030 Hb_001221_020 Hb_001221_020 Hb_001493_150--Hb_001221_020 Hb_005648_010 Hb_005648_010 Hb_001493_150--Hb_005648_010 Hb_021576_010 Hb_021576_010 Hb_001493_150--Hb_021576_010 Hb_006846_120 Hb_006846_120 Hb_000808_170--Hb_006846_120 Hb_000041_060 Hb_000041_060 Hb_000808_170--Hb_000041_060 Hb_000317_350 Hb_000317_350 Hb_000808_170--Hb_000317_350 Hb_003207_010 Hb_003207_010 Hb_000808_170--Hb_003207_010 Hb_000808_170--Hb_073171_100 Hb_028960_030--Hb_011224_160 Hb_003683_010 Hb_003683_010 Hb_028960_030--Hb_003683_010 Hb_000979_220 Hb_000979_220 Hb_028960_030--Hb_000979_220 Hb_011671_270 Hb_011671_270 Hb_028960_030--Hb_011671_270 Hb_011674_040 Hb_011674_040 Hb_028960_030--Hb_011674_040 Hb_028960_030--Hb_021576_010 Hb_006501_160 Hb_006501_160 Hb_073171_100--Hb_006501_160 Hb_000347_450 Hb_000347_450 Hb_073171_100--Hb_000347_450 Hb_073171_100--Hb_011224_160 Hb_001019_050 Hb_001019_050 Hb_073171_100--Hb_001019_050 Hb_016347_010 Hb_016347_010 Hb_073171_100--Hb_016347_010 Hb_012022_080 Hb_012022_080 Hb_000159_120--Hb_012022_080 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_000159_120--Hb_001019_050 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_011224_160--Hb_000347_450 Hb_000088_270 Hb_000088_270 Hb_011224_160--Hb_000088_270 Hb_003777_290 Hb_003777_290 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_011224_160--Hb_021576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.27406 11.1253 16.5853 15.3344 5.34515 8.50662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4784 10.6538 10.5941 41.4033 20.2813

CAGE analysis