Hb_003683_010

Information

Type -
Description -
Location Contig3683: 4390-9771
Sequence    

Annotation

kegg
ID rcu:RCOM_1619120
description longevity assurance factor, putative
nr
ID XP_002512021.1
description longevity assurance factor, putative [Ricinus communis]
swissprot
ID Q8W4Y5
description ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1
trembl
ID B9RE82
description Longevity assurance factor, putative OS=Ricinus communis GN=RCOM_1619120 PE=4 SV=1
Gene Ontology
ID GO:0005783
description lag1 longevity assurance homolog 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37863: 4498-9551 , PASA_asmbl_37864: 4498-9551 , PASA_asmbl_37865: 6281-7346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_010 0.0 - - longevity assurance factor, putative [Ricinus communis]
2 Hb_000742_170 0.0786717647 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_028960_030 0.0818883881 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
4 Hb_003777_290 0.0828161142 - - polypyrimidine tract binding protein, putative [Ricinus communis]
5 Hb_000009_030 0.0880945647 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
6 Hb_163256_010 0.0883627763 - - PREDICTED: phosphoglucomutase, chloroplastic [Jatropha curcas]
7 Hb_005489_040 0.0900735175 - - PREDICTED: cullin-1 [Jatropha curcas]
8 Hb_004837_280 0.0931359334 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
9 Hb_002301_100 0.0948107085 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
10 Hb_011485_060 0.0972180934 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
11 Hb_021576_010 0.097832122 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
12 Hb_107298_010 0.0997778942 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
13 Hb_002046_010 0.099831949 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012733_070 0.1006761825 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
15 Hb_000409_050 0.1021785488 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
16 Hb_011674_040 0.1039947064 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
17 Hb_002968_080 0.1042118546 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
18 Hb_000976_110 0.1048096219 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
19 Hb_000979_220 0.1049807004 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
20 Hb_055062_040 0.1064072212 - - ceramidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003683_010 Hb_003683_010 Hb_000742_170 Hb_000742_170 Hb_003683_010--Hb_000742_170 Hb_028960_030 Hb_028960_030 Hb_003683_010--Hb_028960_030 Hb_003777_290 Hb_003777_290 Hb_003683_010--Hb_003777_290 Hb_000009_030 Hb_000009_030 Hb_003683_010--Hb_000009_030 Hb_163256_010 Hb_163256_010 Hb_003683_010--Hb_163256_010 Hb_005489_040 Hb_005489_040 Hb_003683_010--Hb_005489_040 Hb_002046_010 Hb_002046_010 Hb_000742_170--Hb_002046_010 Hb_000022_150 Hb_000022_150 Hb_000742_170--Hb_000022_150 Hb_005333_050 Hb_005333_050 Hb_000742_170--Hb_005333_050 Hb_000011_270 Hb_000011_270 Hb_000742_170--Hb_000011_270 Hb_004096_190 Hb_004096_190 Hb_000742_170--Hb_004096_190 Hb_011224_160 Hb_011224_160 Hb_028960_030--Hb_011224_160 Hb_000979_220 Hb_000979_220 Hb_028960_030--Hb_000979_220 Hb_011671_270 Hb_011671_270 Hb_028960_030--Hb_011671_270 Hb_011674_040 Hb_011674_040 Hb_028960_030--Hb_011674_040 Hb_021576_010 Hb_021576_010 Hb_028960_030--Hb_021576_010 Hb_003777_290--Hb_021576_010 Hb_003777_290--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_003777_290--Hb_004096_110 Hb_003777_290--Hb_011224_160 Hb_000363_190 Hb_000363_190 Hb_003777_290--Hb_000363_190 Hb_003777_290--Hb_005489_040 Hb_000976_110 Hb_000976_110 Hb_000009_030--Hb_000976_110 Hb_000009_030--Hb_005489_040 Hb_000318_150 Hb_000318_150 Hb_000009_030--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000009_030--Hb_000787_200 Hb_160608_010 Hb_160608_010 Hb_000009_030--Hb_160608_010 Hb_001587_030 Hb_001587_030 Hb_000009_030--Hb_001587_030 Hb_163256_010--Hb_000009_030 Hb_001221_180 Hb_001221_180 Hb_163256_010--Hb_001221_180 Hb_005260_030 Hb_005260_030 Hb_163256_010--Hb_005260_030 Hb_163256_010--Hb_005489_040 Hb_012330_010 Hb_012330_010 Hb_163256_010--Hb_012330_010 Hb_000409_050 Hb_000409_050 Hb_005489_040--Hb_000409_050 Hb_073171_070 Hb_073171_070 Hb_005489_040--Hb_073171_070 Hb_005489_040--Hb_005260_030 Hb_003117_030 Hb_003117_030 Hb_005489_040--Hb_003117_030 Hb_007413_010 Hb_007413_010 Hb_005489_040--Hb_007413_010 Hb_188281_040 Hb_188281_040 Hb_005489_040--Hb_188281_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.98364 5.55087 7.5242 6.72258 4.33129 4.71267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3881 3.34049 2.76652 12.3288 9.35723

CAGE analysis