Hb_000009_050

Information

Type transcription factor
Description TF Family: C2H2
Location Contig9: 51220-54301
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12520g
description hypothetical protein
nr
ID XP_012079066.1
description PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
swissprot
ID Q9LVQ7
description Protein indeterminate-domain 1 OS=Arabidopsis thaliana GN=IDD1 PE=1 SV=1
trembl
ID A0A067K9Z7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12254 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61821: 51317-53125 , PASA_asmbl_61822: 54258-54536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_050 0.0 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
2 Hb_000304_030 0.1036876459 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
3 Hb_001604_150 0.136613749 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
4 Hb_002701_010 0.1389243977 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_002307_310 0.1435004065 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
6 Hb_000684_040 0.1554582073 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
7 Hb_002631_180 0.1559291916 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
8 Hb_000490_060 0.1562049365 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
9 Hb_023771_010 0.157041209 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
10 Hb_163256_020 0.1624753504 - - fructokinase [Manihot esculenta]
11 Hb_022318_020 0.1643204758 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
12 Hb_010775_040 0.1649582377 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
13 Hb_000215_360 0.167720731 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_012573_040 0.1682681606 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
15 Hb_141990_040 0.1698926517 - - Protein SCAR2, putative [Ricinus communis]
16 Hb_000465_300 0.169999563 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
17 Hb_000753_230 0.1710185328 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
18 Hb_000009_180 0.1714023997 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
19 Hb_004712_210 0.1715475368 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
20 Hb_001341_100 0.1721854318 - - hypothetical protein JCGZ_05568 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_050 Hb_000009_050 Hb_000304_030 Hb_000304_030 Hb_000009_050--Hb_000304_030 Hb_001604_150 Hb_001604_150 Hb_000009_050--Hb_001604_150 Hb_002701_010 Hb_002701_010 Hb_000009_050--Hb_002701_010 Hb_002307_310 Hb_002307_310 Hb_000009_050--Hb_002307_310 Hb_000684_040 Hb_000684_040 Hb_000009_050--Hb_000684_040 Hb_002631_180 Hb_002631_180 Hb_000009_050--Hb_002631_180 Hb_141990_040 Hb_141990_040 Hb_000304_030--Hb_141990_040 Hb_000009_180 Hb_000009_180 Hb_000304_030--Hb_000009_180 Hb_000225_060 Hb_000225_060 Hb_000304_030--Hb_000225_060 Hb_000465_300 Hb_000465_300 Hb_000304_030--Hb_000465_300 Hb_001341_100 Hb_001341_100 Hb_000304_030--Hb_001341_100 Hb_001604_150--Hb_002307_310 Hb_031910_020 Hb_031910_020 Hb_001604_150--Hb_031910_020 Hb_001604_150--Hb_002631_180 Hb_000215_360 Hb_000215_360 Hb_001604_150--Hb_000215_360 Hb_004429_020 Hb_004429_020 Hb_001604_150--Hb_004429_020 Hb_022318_020 Hb_022318_020 Hb_002701_010--Hb_022318_020 Hb_163256_020 Hb_163256_020 Hb_002701_010--Hb_163256_020 Hb_006355_040 Hb_006355_040 Hb_002701_010--Hb_006355_040 Hb_000424_200 Hb_000424_200 Hb_002701_010--Hb_000424_200 Hb_000099_150 Hb_000099_150 Hb_002701_010--Hb_000099_150 Hb_002701_010--Hb_002307_310 Hb_004712_210 Hb_004712_210 Hb_002307_310--Hb_004712_210 Hb_002307_310--Hb_022318_020 Hb_015183_060 Hb_015183_060 Hb_002307_310--Hb_015183_060 Hb_002307_310--Hb_006355_040 Hb_000490_060 Hb_000490_060 Hb_000684_040--Hb_000490_060 Hb_000347_450 Hb_000347_450 Hb_000684_040--Hb_000347_450 Hb_002471_090 Hb_002471_090 Hb_000684_040--Hb_002471_090 Hb_000723_230 Hb_000723_230 Hb_000684_040--Hb_000723_230 Hb_010775_040 Hb_010775_040 Hb_000684_040--Hb_010775_040 Hb_002477_290 Hb_002477_290 Hb_000684_040--Hb_002477_290 Hb_000922_040 Hb_000922_040 Hb_002631_180--Hb_000922_040 Hb_002016_080 Hb_002016_080 Hb_002631_180--Hb_002016_080 Hb_000136_350 Hb_000136_350 Hb_002631_180--Hb_000136_350 Hb_002239_050 Hb_002239_050 Hb_002631_180--Hb_002239_050 Hb_002631_180--Hb_163256_020 Hb_003994_260 Hb_003994_260 Hb_002631_180--Hb_003994_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49199 10.0088 5.23508 5.88847 2.94193 3.47165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75436 16.1431 8.72539 11.1942 6.825

CAGE analysis