Hb_000009_180

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig9: 176292-178848
Sequence    

Annotation

kegg
ID rcu:RCOM_0553150
description geranyl geranyl pyrophosphate synthase, putative (EC:1.3.1.74)
nr
ID Q94ID7.1
description RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
swissprot
ID Q94ID7
description Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1
trembl
ID A9ZN20
description Geranylgeranyl-diphosphate synthase OS=Hevea brasiliensis GN=HbGGPS PE=2 SV=1
Gene Ontology
ID GO:0009507
description geranylgeranyl pyrophosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61848: 168974-175950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_180 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
2 Hb_008770_030 0.1107991063 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
3 Hb_032278_030 0.1151425445 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_003994_060 0.1292230504 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
5 Hb_004453_050 0.1297728456 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
6 Hb_002097_200 0.1351220922 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_000304_030 0.1353309605 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
8 Hb_136509_010 0.1359127322 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
9 Hb_012573_040 0.1381058339 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
10 Hb_000614_250 0.1417651296 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
11 Hb_008173_110 0.1431571518 - - DNA binding protein, putative [Ricinus communis]
12 Hb_000976_310 0.1439116589 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
13 Hb_003929_130 0.1446753819 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
14 Hb_001159_110 0.1457578308 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
15 Hb_000840_250 0.1464571287 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
16 Hb_000175_540 0.1479430511 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
17 Hb_005207_050 0.1490902316 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
18 Hb_000710_060 0.149207792 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
19 Hb_189208_020 0.1496104632 - - LRX2, putative [Ricinus communis]
20 Hb_003373_030 0.1502839735 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_180 Hb_000009_180 Hb_008770_030 Hb_008770_030 Hb_000009_180--Hb_008770_030 Hb_032278_030 Hb_032278_030 Hb_000009_180--Hb_032278_030 Hb_003994_060 Hb_003994_060 Hb_000009_180--Hb_003994_060 Hb_004453_050 Hb_004453_050 Hb_000009_180--Hb_004453_050 Hb_002097_200 Hb_002097_200 Hb_000009_180--Hb_002097_200 Hb_000304_030 Hb_000304_030 Hb_000009_180--Hb_000304_030 Hb_000710_060 Hb_000710_060 Hb_008770_030--Hb_000710_060 Hb_015807_150 Hb_015807_150 Hb_008770_030--Hb_015807_150 Hb_000297_010 Hb_000297_010 Hb_008770_030--Hb_000297_010 Hb_033772_030 Hb_033772_030 Hb_008770_030--Hb_033772_030 Hb_019863_070 Hb_019863_070 Hb_008770_030--Hb_019863_070 Hb_000185_030 Hb_000185_030 Hb_008770_030--Hb_000185_030 Hb_032278_030--Hb_008770_030 Hb_000230_390 Hb_000230_390 Hb_032278_030--Hb_000230_390 Hb_003373_030 Hb_003373_030 Hb_032278_030--Hb_003373_030 Hb_007508_090 Hb_007508_090 Hb_032278_030--Hb_007508_090 Hb_004143_040 Hb_004143_040 Hb_032278_030--Hb_004143_040 Hb_000866_170 Hb_000866_170 Hb_032278_030--Hb_000866_170 Hb_010883_090 Hb_010883_090 Hb_003994_060--Hb_010883_090 Hb_000189_560 Hb_000189_560 Hb_003994_060--Hb_000189_560 Hb_003994_060--Hb_000185_030 Hb_001021_080 Hb_001021_080 Hb_003994_060--Hb_001021_080 Hb_003994_060--Hb_008770_030 Hb_004705_140 Hb_004705_140 Hb_003994_060--Hb_004705_140 Hb_001633_210 Hb_001633_210 Hb_004453_050--Hb_001633_210 Hb_007416_320 Hb_007416_320 Hb_004453_050--Hb_007416_320 Hb_000120_470 Hb_000120_470 Hb_004453_050--Hb_000120_470 Hb_000614_250 Hb_000614_250 Hb_004453_050--Hb_000614_250 Hb_008173_110 Hb_008173_110 Hb_004453_050--Hb_008173_110 Hb_001545_170 Hb_001545_170 Hb_004453_050--Hb_001545_170 Hb_189208_020 Hb_189208_020 Hb_002097_200--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100 Hb_000009_050 Hb_000009_050 Hb_000304_030--Hb_000009_050 Hb_141990_040 Hb_141990_040 Hb_000304_030--Hb_141990_040 Hb_000225_060 Hb_000225_060 Hb_000304_030--Hb_000225_060 Hb_000465_300 Hb_000465_300 Hb_000304_030--Hb_000465_300 Hb_001341_100 Hb_001341_100 Hb_000304_030--Hb_001341_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.467273 2.26943 0.693579 0.795638 0.356944 1.31061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03532 2.05356 1.50783 1.67649 0.801924

CAGE analysis