Hb_022318_020

Information

Type -
Description -
Location Contig22318: 33380-44234
Sequence    

Annotation

kegg
ID rcu:RCOM_1378070
description multidrug resistance protein 1, 2, putative (EC:3.6.3.44 3.6.3.43)
nr
ID KDP23114.1
description hypothetical protein JCGZ_00541 [Jatropha curcas]
swissprot
ID Q9LJX0
description ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1
trembl
ID A0A067JUA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00541 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23100: 37861-38140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022318_020 0.0 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
2 Hb_163256_020 0.0778658045 - - fructokinase [Manihot esculenta]
3 Hb_002701_010 0.0874861461 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_006256_030 0.0902569185 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
5 Hb_000448_050 0.1005157683 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
6 Hb_001648_030 0.1028058336 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
7 Hb_001016_100 0.1061257064 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
8 Hb_002307_310 0.1088851843 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
9 Hb_000723_230 0.1094569005 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
10 Hb_001019_100 0.1106750097 - - BnaC02g13240D [Brassica napus]
11 Hb_000465_300 0.1112603498 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
12 Hb_000424_200 0.1114951794 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
13 Hb_002534_100 0.1118191156 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
14 Hb_006355_040 0.1138683697 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
15 Hb_006740_030 0.115731035 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
16 Hb_005843_140 0.1162377376 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
17 Hb_044653_040 0.1175443127 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
18 Hb_002060_010 0.1179118336 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
19 Hb_004712_210 0.1188888124 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
20 Hb_002028_090 0.1227399507 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_022318_020 Hb_022318_020 Hb_163256_020 Hb_163256_020 Hb_022318_020--Hb_163256_020 Hb_002701_010 Hb_002701_010 Hb_022318_020--Hb_002701_010 Hb_006256_030 Hb_006256_030 Hb_022318_020--Hb_006256_030 Hb_000448_050 Hb_000448_050 Hb_022318_020--Hb_000448_050 Hb_001648_030 Hb_001648_030 Hb_022318_020--Hb_001648_030 Hb_001016_100 Hb_001016_100 Hb_022318_020--Hb_001016_100 Hb_004324_090 Hb_004324_090 Hb_163256_020--Hb_004324_090 Hb_000465_300 Hb_000465_300 Hb_163256_020--Hb_000465_300 Hb_163256_020--Hb_006256_030 Hb_158445_010 Hb_158445_010 Hb_163256_020--Hb_158445_010 Hb_000310_020 Hb_000310_020 Hb_163256_020--Hb_000310_020 Hb_002701_010--Hb_163256_020 Hb_006355_040 Hb_006355_040 Hb_002701_010--Hb_006355_040 Hb_000424_200 Hb_000424_200 Hb_002701_010--Hb_000424_200 Hb_000099_150 Hb_000099_150 Hb_002701_010--Hb_000099_150 Hb_002307_310 Hb_002307_310 Hb_002701_010--Hb_002307_310 Hb_002060_010 Hb_002060_010 Hb_006256_030--Hb_002060_010 Hb_006256_030--Hb_158445_010 Hb_001718_030 Hb_001718_030 Hb_006256_030--Hb_001718_030 Hb_002260_010 Hb_002260_010 Hb_006256_030--Hb_002260_010 Hb_000448_050--Hb_001648_030 Hb_000398_100 Hb_000398_100 Hb_000448_050--Hb_000398_100 Hb_004223_030 Hb_004223_030 Hb_000448_050--Hb_004223_030 Hb_003657_010 Hb_003657_010 Hb_000448_050--Hb_003657_010 Hb_001825_060 Hb_001825_060 Hb_000448_050--Hb_001825_060 Hb_001648_030--Hb_000398_100 Hb_001648_030--Hb_163256_020 Hb_005162_060 Hb_005162_060 Hb_001648_030--Hb_005162_060 Hb_002534_100 Hb_002534_100 Hb_001648_030--Hb_002534_100 Hb_001892_070 Hb_001892_070 Hb_001016_100--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_001016_100--Hb_000920_200 Hb_003360_040 Hb_003360_040 Hb_001016_100--Hb_003360_040 Hb_000140_090 Hb_000140_090 Hb_001016_100--Hb_000140_090 Hb_002968_040 Hb_002968_040 Hb_001016_100--Hb_002968_040 Hb_000964_030 Hb_000964_030 Hb_001016_100--Hb_000964_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0793319 0.274192 0.335854 0.217971 0.120438 0.0627651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205967 0.495268 0.32838 0.24972 0.250679

CAGE analysis