Hb_000398_100

Information

Type -
Description -
Location Contig398: 158618-175446
Sequence    

Annotation

kegg
ID csv:101228181
description UPF0420 protein C16orf58 homolog
nr
ID XP_007023151.1
description Uncharacterized protein isoform 2 [Theobroma cacao]
swissprot
ID Q93YU2
description Protein root UVB sensitive 6 OS=Arabidopsis thaliana GN=RUS6 PE=2 SV=1
trembl
ID A0A061G8N1
description Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_027141 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39665: 161066-161449 , PASA_asmbl_39666: 171107-171355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_100 0.0 - - Uncharacterized protein isoform 2 [Theobroma cacao]
2 Hb_000029_060 0.0801467109 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
3 Hb_012573_040 0.0826572406 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
4 Hb_000086_420 0.0860205209 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
5 Hb_000327_140 0.0868170388 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
6 Hb_012239_020 0.0877592004 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
7 Hb_004916_010 0.0878145327 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
8 Hb_000484_130 0.0882750547 - - splicing factor, putative [Ricinus communis]
9 Hb_010068_080 0.0930656185 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
10 Hb_001648_030 0.0934248356 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
11 Hb_002542_110 0.0956048447 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
12 Hb_003657_010 0.0960724866 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000173_470 0.0965318017 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
14 Hb_000292_100 0.0965521257 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
15 Hb_005725_210 0.098216042 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
16 Hb_002157_080 0.0987656658 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
17 Hb_000291_010 0.0990757401 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
18 Hb_003849_110 0.099196111 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
19 Hb_000000_230 0.0997342348 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
20 Hb_000738_020 0.0998501926 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000398_100 Hb_000398_100 Hb_000029_060 Hb_000029_060 Hb_000398_100--Hb_000029_060 Hb_012573_040 Hb_012573_040 Hb_000398_100--Hb_012573_040 Hb_000086_420 Hb_000086_420 Hb_000398_100--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000398_100--Hb_000327_140 Hb_012239_020 Hb_012239_020 Hb_000398_100--Hb_012239_020 Hb_004916_010 Hb_004916_010 Hb_000398_100--Hb_004916_010 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_001716_020 Hb_001716_020 Hb_000029_060--Hb_001716_020 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000029_060--Hb_000086_420 Hb_000029_060--Hb_000327_140 Hb_000173_470 Hb_000173_470 Hb_012573_040--Hb_000173_470 Hb_000951_130 Hb_000951_130 Hb_012573_040--Hb_000951_130 Hb_001825_060 Hb_001825_060 Hb_012573_040--Hb_001825_060 Hb_000270_120 Hb_000270_120 Hb_012573_040--Hb_000270_120 Hb_012573_040--Hb_004916_010 Hb_000086_420--Hb_000327_140 Hb_000086_420--Hb_012239_020 Hb_004994_240 Hb_004994_240 Hb_000086_420--Hb_004994_240 Hb_000292_100 Hb_000292_100 Hb_000086_420--Hb_000292_100 Hb_000738_020 Hb_000738_020 Hb_000086_420--Hb_000738_020 Hb_000327_140--Hb_012239_020 Hb_000327_140--Hb_004994_240 Hb_000120_030 Hb_000120_030 Hb_000327_140--Hb_000120_030 Hb_002232_480 Hb_002232_480 Hb_000327_140--Hb_002232_480 Hb_012239_020--Hb_000738_020 Hb_000484_130 Hb_000484_130 Hb_012239_020--Hb_000484_130 Hb_012239_020--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_012239_020--Hb_001300_010 Hb_002818_030 Hb_002818_030 Hb_004916_010--Hb_002818_030 Hb_004916_010--Hb_003849_110 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_004916_010--Hb_001716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05785 13.9302 9.38307 6.97313 3.88531 4.97182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.7664 11.0345 9.03774 6.77412 8.2844

CAGE analysis