Hb_000951_130

Information

Type -
Description -
Location Contig951: 196483-199738
Sequence    

Annotation

kegg
ID rcu:RCOM_0817840
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_012074569.1
description PREDICTED: transcription factor GTE2-like [Jatropha curcas]
swissprot
ID Q9S7T1
description Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1
trembl
ID A0A067KLR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09920 PE=4 SV=1
Gene Ontology
ID GO:0005515
description global transcription factor group isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63420: 196511-199733 , PASA_asmbl_63421: 196511-199733 , PASA_asmbl_63422: 196511-199733 , PASA_asmbl_63423: 196511-199733
cDNA
(Sanger)
(ID:Location)		 023_A24.ab1: 199558-199733

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000951_130 0.0 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
2 Hb_000656_390 0.0707567297 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
3 Hb_001723_100 0.0800669995 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
4 Hb_020178_040 0.0835642976 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000173_470 0.0889743882 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
6 Hb_000347_400 0.0899581788 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
7 Hb_002272_030 0.0909929044 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
8 Hb_001717_010 0.0910062878 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_000152_330 0.0926120071 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
10 Hb_005245_100 0.0955871156 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
11 Hb_007017_040 0.0982270153 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
12 Hb_003607_130 0.0990031624 - - serine/threonine protein kinase, putative [Ricinus communis]
13 Hb_012573_040 0.0995540062 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
14 Hb_007839_020 0.100081906 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006970_050 0.1014647467 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
16 Hb_000270_120 0.1018228005 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
17 Hb_002157_080 0.1042365881 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
18 Hb_009288_010 0.1047872907 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_001411_140 0.1051762955 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
20 Hb_000753_230 0.105380772 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000951_130 Hb_000951_130 Hb_000656_390 Hb_000656_390 Hb_000951_130--Hb_000656_390 Hb_001723_100 Hb_001723_100 Hb_000951_130--Hb_001723_100 Hb_020178_040 Hb_020178_040 Hb_000951_130--Hb_020178_040 Hb_000173_470 Hb_000173_470 Hb_000951_130--Hb_000173_470 Hb_000347_400 Hb_000347_400 Hb_000951_130--Hb_000347_400 Hb_002272_030 Hb_002272_030 Hb_000951_130--Hb_002272_030 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_000656_390--Hb_001723_100 Hb_000152_330 Hb_000152_330 Hb_000656_390--Hb_000152_330 Hb_000656_390--Hb_002272_030 Hb_001723_100--Hb_020178_040 Hb_066920_030 Hb_066920_030 Hb_001723_100--Hb_066920_030 Hb_001723_100--Hb_002272_030 Hb_001404_110 Hb_001404_110 Hb_001723_100--Hb_001404_110 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_001723_100--Hb_000347_400 Hb_020178_040--Hb_002272_030 Hb_002042_050 Hb_002042_050 Hb_020178_040--Hb_002042_050 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_020178_040--Hb_000347_400 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000890_150 Hb_000890_150 Hb_000173_470--Hb_000890_150 Hb_001473_110 Hb_001473_110 Hb_000347_400--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_000347_400--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_000347_400--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_002272_030--Hb_009288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.5117 111.353 55.9421 82.4677 23.0116 24.2736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.573 54.1815 75.3399 54.2292 56.3631

CAGE analysis