Hb_000270_120

Information

Type -
Description -
Location Contig270: 96113-101437
Sequence    

Annotation

kegg
ID rcu:RCOM_1513340
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012080191.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
swissprot
ID Q8GYP6
description Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=2 SV=1
trembl
ID A0A067K4Z8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11568 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28164: 96214-101438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
2 Hb_001541_070 0.0769570972 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
3 Hb_000152_330 0.0870822163 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
4 Hb_001723_100 0.0871934365 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
5 Hb_000086_630 0.088048706 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
6 Hb_000656_390 0.0969629548 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
7 Hb_002542_110 0.0993985291 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
8 Hb_000951_130 0.1018228005 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
9 Hb_012573_040 0.1034279543 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
10 Hb_066920_030 0.1040235562 - - PREDICTED: adagio protein 1 [Jatropha curcas]
11 Hb_002157_080 0.1041182695 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
12 Hb_002272_030 0.1089091713 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
13 Hb_004204_010 0.108957317 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
14 Hb_000008_440 0.1118361829 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
15 Hb_002686_230 0.1126197867 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_009658_030 0.1133309266 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
17 Hb_001404_110 0.1146532231 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
18 Hb_002686_090 0.115191447 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
19 Hb_001105_110 0.1156839022 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004435_030 0.1159182562 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_120 Hb_000270_120 Hb_001541_070 Hb_001541_070 Hb_000270_120--Hb_001541_070 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_001723_100 Hb_001723_100 Hb_000270_120--Hb_001723_100 Hb_000086_630 Hb_000086_630 Hb_000270_120--Hb_000086_630 Hb_000656_390 Hb_000656_390 Hb_000270_120--Hb_000656_390 Hb_002542_110 Hb_002542_110 Hb_000270_120--Hb_002542_110 Hb_001541_070--Hb_002542_110 Hb_000008_440 Hb_000008_440 Hb_001541_070--Hb_000008_440 Hb_001405_070 Hb_001405_070 Hb_001541_070--Hb_001405_070 Hb_001541_070--Hb_000086_630 Hb_007810_010 Hb_007810_010 Hb_001541_070--Hb_007810_010 Hb_000152_330--Hb_000656_390 Hb_000951_130 Hb_000951_130 Hb_000152_330--Hb_000951_130 Hb_001411_140 Hb_001411_140 Hb_000152_330--Hb_001411_140 Hb_000173_470 Hb_000173_470 Hb_000152_330--Hb_000173_470 Hb_000152_330--Hb_001723_100 Hb_020178_040 Hb_020178_040 Hb_001723_100--Hb_020178_040 Hb_066920_030 Hb_066920_030 Hb_001723_100--Hb_066920_030 Hb_002272_030 Hb_002272_030 Hb_001723_100--Hb_002272_030 Hb_001404_110 Hb_001404_110 Hb_001723_100--Hb_001404_110 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_000347_400 Hb_000347_400 Hb_001723_100--Hb_000347_400 Hb_001105_110 Hb_001105_110 Hb_000086_630--Hb_001105_110 Hb_001635_190 Hb_001635_190 Hb_000086_630--Hb_001635_190 Hb_158530_020 Hb_158530_020 Hb_000086_630--Hb_158530_020 Hb_001716_040 Hb_001716_040 Hb_000086_630--Hb_001716_040 Hb_000086_630--Hb_002542_110 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_000656_390--Hb_001723_100 Hb_000656_390--Hb_002272_030 Hb_000640_040 Hb_000640_040 Hb_002542_110--Hb_000640_040 Hb_010068_080 Hb_010068_080 Hb_002542_110--Hb_010068_080 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60121 14.4513 6.36079 7.72055 2.18387 3.01587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03306 5.7294 10.6927 7.60124 11.0883

CAGE analysis