Hb_001105_110

Information

Type -
Description -
Location Contig1105: 59474-71502
Sequence    

Annotation

kegg
ID rcu:RCOM_1341920
description hypothetical protein
nr
ID XP_002515140.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ULE6
description Paladin OS=Homo sapiens GN=PALD1 PE=1 SV=3
trembl
ID B9RN01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341920 PE=4 SV=1
Gene Ontology
ID GO:0005829
description paladin-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03294: 59576-59684 , PASA_asmbl_03295: 59750-61585 , PASA_asmbl_03296: 62205-62481 , PASA_asmbl_03297: 63694-71524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000086_630 0.0890987233 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
3 Hb_004429_020 0.0924383481 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
4 Hb_001635_190 0.1091527439 - - RNA m5u methyltransferase, putative [Ricinus communis]
5 Hb_000270_120 0.1156839022 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
6 Hb_002471_090 0.1203884241 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
7 Hb_000243_260 0.1205230629 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
8 Hb_002232_430 0.1214778341 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
9 Hb_000120_640 0.1233270728 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_020178_040 0.1255188287 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001124_130 0.1259668997 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
12 Hb_012340_060 0.1267444538 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000109_180 0.127171136 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
14 Hb_000025_350 0.1272719916 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
15 Hb_001014_060 0.1276331654 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
16 Hb_165026_010 0.1287733064 transcription factor TF Family: NAC hypothetical protein JCGZ_14166 [Jatropha curcas]
17 Hb_001541_070 0.1291784739 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
18 Hb_001404_110 0.1296252584 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
19 Hb_002119_130 0.1298982209 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
20 Hb_002272_030 0.1299681837 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001105_110 Hb_001105_110 Hb_000086_630 Hb_000086_630 Hb_001105_110--Hb_000086_630 Hb_004429_020 Hb_004429_020 Hb_001105_110--Hb_004429_020 Hb_001635_190 Hb_001635_190 Hb_001105_110--Hb_001635_190 Hb_000270_120 Hb_000270_120 Hb_001105_110--Hb_000270_120 Hb_002471_090 Hb_002471_090 Hb_001105_110--Hb_002471_090 Hb_000243_260 Hb_000243_260 Hb_001105_110--Hb_000243_260 Hb_000086_630--Hb_000270_120 Hb_000086_630--Hb_001635_190 Hb_158530_020 Hb_158530_020 Hb_000086_630--Hb_158530_020 Hb_001716_040 Hb_001716_040 Hb_000086_630--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000086_630--Hb_002542_110 Hb_003913_130 Hb_003913_130 Hb_004429_020--Hb_003913_130 Hb_000140_090 Hb_000140_090 Hb_004429_020--Hb_000140_090 Hb_004429_020--Hb_001635_190 Hb_002119_130 Hb_002119_130 Hb_004429_020--Hb_002119_130 Hb_010578_080 Hb_010578_080 Hb_004429_020--Hb_010578_080 Hb_000964_030 Hb_000964_030 Hb_004429_020--Hb_000964_030 Hb_000521_240 Hb_000521_240 Hb_001635_190--Hb_000521_240 Hb_001635_190--Hb_002471_090 Hb_011218_090 Hb_011218_090 Hb_001635_190--Hb_011218_090 Hb_001635_190--Hb_002119_130 Hb_010068_080 Hb_010068_080 Hb_001635_190--Hb_010068_080 Hb_002007_080 Hb_002007_080 Hb_001635_190--Hb_002007_080 Hb_001541_070 Hb_001541_070 Hb_000270_120--Hb_001541_070 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_001723_100 Hb_001723_100 Hb_000270_120--Hb_001723_100 Hb_000656_390 Hb_000656_390 Hb_000270_120--Hb_000656_390 Hb_000270_120--Hb_002542_110 Hb_002471_090--Hb_000521_240 Hb_189216_010 Hb_189216_010 Hb_002471_090--Hb_189216_010 Hb_000778_010 Hb_000778_010 Hb_002471_090--Hb_000778_010 Hb_002471_090--Hb_011218_090 Hb_020178_040 Hb_020178_040 Hb_002471_090--Hb_020178_040 Hb_002042_050 Hb_002042_050 Hb_000243_260--Hb_002042_050 Hb_011618_070 Hb_011618_070 Hb_000243_260--Hb_011618_070 Hb_000243_260--Hb_020178_040 Hb_011883_020 Hb_011883_020 Hb_000243_260--Hb_011883_020 Hb_003758_010 Hb_003758_010 Hb_000243_260--Hb_003758_010 Hb_002631_210 Hb_002631_210 Hb_000243_260--Hb_002631_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46039 7.62578 7.40959 5.47906 2.08773 1.53224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57996 4.63204 9.23901 7.09003 6.56972

CAGE analysis