Hb_000086_630

Information

Type -
Description -
Location Contig86: 557899-564302
Sequence    

Annotation

kegg
ID pop:POPTR_0017s07720g
description POPTRDRAFT_577371; putative oxoglutarate-malate-translocase family protein
nr
ID XP_012069162.1
description PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FMF7
description Dicarboxylate transporter 2.1, chloroplastic OS=Arabidopsis thaliana GN=DIT2-1 PE=1 SV=1
trembl
ID A0A067L9Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24928 PE=4 SV=1
Gene Ontology
ID GO:0009534
description dicarboxylate transporter chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60781: 558317-562038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_630 0.0 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
2 Hb_000270_120 0.088048706 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
3 Hb_001105_110 0.0890987233 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001635_190 0.0906817675 - - RNA m5u methyltransferase, putative [Ricinus communis]
5 Hb_158530_020 0.0917080535 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
6 Hb_001716_040 0.0928677296 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
7 Hb_002542_110 0.0932705141 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
8 Hb_000521_240 0.0994865642 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
9 Hb_000035_350 0.0997532996 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
10 Hb_002471_090 0.1002847269 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
11 Hb_002272_030 0.1019210198 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
12 Hb_002686_090 0.1026429723 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
13 Hb_000640_040 0.1027093405 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
14 Hb_001541_070 0.1044947665 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
15 Hb_004429_020 0.1058607556 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
16 Hb_000635_060 0.1069586781 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
17 Hb_001124_130 0.1073948649 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_004218_180 0.1074381112 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
19 Hb_001478_010 0.1081413777 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
20 Hb_032717_060 0.1082862341 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_630 Hb_000086_630 Hb_000270_120 Hb_000270_120 Hb_000086_630--Hb_000270_120 Hb_001105_110 Hb_001105_110 Hb_000086_630--Hb_001105_110 Hb_001635_190 Hb_001635_190 Hb_000086_630--Hb_001635_190 Hb_158530_020 Hb_158530_020 Hb_000086_630--Hb_158530_020 Hb_001716_040 Hb_001716_040 Hb_000086_630--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000086_630--Hb_002542_110 Hb_001541_070 Hb_001541_070 Hb_000270_120--Hb_001541_070 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_001723_100 Hb_001723_100 Hb_000270_120--Hb_001723_100 Hb_000656_390 Hb_000656_390 Hb_000270_120--Hb_000656_390 Hb_000270_120--Hb_002542_110 Hb_004429_020 Hb_004429_020 Hb_001105_110--Hb_004429_020 Hb_001105_110--Hb_001635_190 Hb_001105_110--Hb_000270_120 Hb_002471_090 Hb_002471_090 Hb_001105_110--Hb_002471_090 Hb_000243_260 Hb_000243_260 Hb_001105_110--Hb_000243_260 Hb_000521_240 Hb_000521_240 Hb_001635_190--Hb_000521_240 Hb_001635_190--Hb_002471_090 Hb_011218_090 Hb_011218_090 Hb_001635_190--Hb_011218_090 Hb_002119_130 Hb_002119_130 Hb_001635_190--Hb_002119_130 Hb_010068_080 Hb_010068_080 Hb_001635_190--Hb_010068_080 Hb_002007_080 Hb_002007_080 Hb_001635_190--Hb_002007_080 Hb_015675_040 Hb_015675_040 Hb_158530_020--Hb_015675_040 Hb_000504_180 Hb_000504_180 Hb_158530_020--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_158530_020--Hb_000185_220 Hb_062226_060 Hb_062226_060 Hb_158530_020--Hb_062226_060 Hb_006059_010 Hb_006059_010 Hb_158530_020--Hb_006059_010 Hb_000023_360 Hb_000023_360 Hb_158530_020--Hb_000023_360 Hb_000640_040 Hb_000640_040 Hb_001716_040--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_001716_040--Hb_000504_180 Hb_002542_110--Hb_000640_040 Hb_002542_110--Hb_010068_080 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0507 7.25283 5.81848 5.30976 1.80242 2.42484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.10156 5.00575 7.1746 7.01836 9.21755

CAGE analysis