Hb_001635_190

Information

Type -
Description -
Location Contig1635: 198452-210713
Sequence    

Annotation

kegg
ID rcu:RCOM_1486130
description RNA m5u methyltransferase, putative
nr
ID XP_002515896.1
description RNA m5u methyltransferase, putative [Ricinus communis]
swissprot
ID O04373
description IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2
trembl
ID B9RQ77
description RNA m5u methyltransferase, putative OS=Ricinus communis GN=RCOM_1486130 PE=4 SV=1
Gene Ontology
ID GO:0003723
description trna (uracil-5-)-methyltransferase homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14955: 198369-203896 , PASA_asmbl_14956: 198445-203879 , PASA_asmbl_14957: 204575-209198 , PASA_asmbl_14958: 209434-210745
cDNA
(Sanger)
(ID:Location)		 011_F07.ab1: 198955-203506 , 014_M15.ab1: 198450-199555 , 018_D24.ab1: 198955-203479 , 025_I23.ab1: 198450-199531 , 027_A19.ab1: 198955-203465 , 050_F24.ab1: 198955-203463

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_190 0.0 - - RNA m5u methyltransferase, putative [Ricinus communis]
2 Hb_000521_240 0.0520318693 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
3 Hb_002471_090 0.0689806667 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
4 Hb_011218_090 0.0856630368 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
5 Hb_002119_130 0.0872914929 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
6 Hb_010068_080 0.0879906357 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
7 Hb_002007_080 0.0900927607 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
8 Hb_004429_020 0.0902294569 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
9 Hb_000086_630 0.0906817675 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
10 Hb_003657_010 0.0936624423 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000465_300 0.094030529 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
12 Hb_001314_070 0.0943342264 - - conserved hypothetical protein [Ricinus communis]
13 Hb_050847_050 0.0946940646 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
14 Hb_000008_440 0.0958782613 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
15 Hb_010578_080 0.0972956997 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
16 Hb_022250_060 0.0979275545 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
17 Hb_001699_220 0.097977653 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
18 Hb_000484_130 0.0982394242 - - splicing factor, putative [Ricinus communis]
19 Hb_000173_470 0.0990622478 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
20 Hb_007218_120 0.0996391496 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001635_190 Hb_001635_190 Hb_000521_240 Hb_000521_240 Hb_001635_190--Hb_000521_240 Hb_002471_090 Hb_002471_090 Hb_001635_190--Hb_002471_090 Hb_011218_090 Hb_011218_090 Hb_001635_190--Hb_011218_090 Hb_002119_130 Hb_002119_130 Hb_001635_190--Hb_002119_130 Hb_010068_080 Hb_010068_080 Hb_001635_190--Hb_010068_080 Hb_002007_080 Hb_002007_080 Hb_001635_190--Hb_002007_080 Hb_000521_240--Hb_002471_090 Hb_000917_230 Hb_000917_230 Hb_000521_240--Hb_000917_230 Hb_001716_040 Hb_001716_040 Hb_000521_240--Hb_001716_040 Hb_000521_240--Hb_010068_080 Hb_000521_240--Hb_011218_090 Hb_189216_010 Hb_189216_010 Hb_002471_090--Hb_189216_010 Hb_000778_010 Hb_000778_010 Hb_002471_090--Hb_000778_010 Hb_002471_090--Hb_011218_090 Hb_020178_040 Hb_020178_040 Hb_002471_090--Hb_020178_040 Hb_000359_060 Hb_000359_060 Hb_011218_090--Hb_000359_060 Hb_000890_150 Hb_000890_150 Hb_011218_090--Hb_000890_150 Hb_000049_210 Hb_000049_210 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_149985_010 Hb_149985_010 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140 Hb_007218_120 Hb_007218_120 Hb_002119_130--Hb_007218_120 Hb_003360_040 Hb_003360_040 Hb_002119_130--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_002119_130--Hb_000920_200 Hb_001218_030 Hb_001218_030 Hb_002119_130--Hb_001218_030 Hb_000173_410 Hb_000173_410 Hb_002119_130--Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_002119_130--Hb_000454_090 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_001304_110 Hb_001304_110 Hb_010068_080--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_010068_080--Hb_000640_040 Hb_002542_110 Hb_002542_110 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_000392_420 Hb_000392_420 Hb_002007_080--Hb_000392_420 Hb_002007_080--Hb_000778_010 Hb_007894_150 Hb_007894_150 Hb_002007_080--Hb_007894_150 Hb_164390_010 Hb_164390_010 Hb_002007_080--Hb_164390_010 Hb_000349_260 Hb_000349_260 Hb_002007_080--Hb_000349_260 Hb_000173_280 Hb_000173_280 Hb_002007_080--Hb_000173_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.67109 14.5774 13.552 10.4904 4.78078 5.9474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.283 13.6821 15.7387 14.2841 12.758

CAGE analysis