Hb_001648_030

Information

Type -
Description -
Location Contig1648: 90068-93375
Sequence    

Annotation

kegg
ID egr:104421600
description uncharacterized LOC104421600
nr
ID XP_012065814.1
description PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
swissprot
ID Q6DEF4
description LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rerio GN=lysmd2 PE=2 SV=1
trembl
ID A0A067L4J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15152: 90139-90268 , PASA_asmbl_15153: 90330-93057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001648_030 0.0 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
2 Hb_000398_100 0.0934248356 - - Uncharacterized protein isoform 2 [Theobroma cacao]
3 Hb_163256_020 0.0940064541 - - fructokinase [Manihot esculenta]
4 Hb_000448_050 0.1021003334 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
5 Hb_005162_060 0.1026720321 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
6 Hb_022318_020 0.1028058336 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
7 Hb_002534_100 0.1080566139 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
8 Hb_000173_470 0.1090542004 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
9 Hb_000465_300 0.10969666 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
10 Hb_003038_240 0.1110582233 - - conserved hypothetical protein [Ricinus communis]
11 Hb_158445_010 0.1129458529 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
12 Hb_006740_030 0.1142253349 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
13 Hb_004324_090 0.1142646972 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
14 Hb_000161_130 0.1158105662 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
15 Hb_004223_030 0.1167316669 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
16 Hb_000521_240 0.1171796716 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
17 Hb_012107_060 0.1178849314 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
18 Hb_001635_190 0.1179359898 - - RNA m5u methyltransferase, putative [Ricinus communis]
19 Hb_002311_360 0.1193601969 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
20 Hb_032717_060 0.1203951642 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001648_030 Hb_001648_030 Hb_000398_100 Hb_000398_100 Hb_001648_030--Hb_000398_100 Hb_163256_020 Hb_163256_020 Hb_001648_030--Hb_163256_020 Hb_000448_050 Hb_000448_050 Hb_001648_030--Hb_000448_050 Hb_005162_060 Hb_005162_060 Hb_001648_030--Hb_005162_060 Hb_022318_020 Hb_022318_020 Hb_001648_030--Hb_022318_020 Hb_002534_100 Hb_002534_100 Hb_001648_030--Hb_002534_100 Hb_000029_060 Hb_000029_060 Hb_000398_100--Hb_000029_060 Hb_012573_040 Hb_012573_040 Hb_000398_100--Hb_012573_040 Hb_000086_420 Hb_000086_420 Hb_000398_100--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000398_100--Hb_000327_140 Hb_012239_020 Hb_012239_020 Hb_000398_100--Hb_012239_020 Hb_004916_010 Hb_004916_010 Hb_000398_100--Hb_004916_010 Hb_004324_090 Hb_004324_090 Hb_163256_020--Hb_004324_090 Hb_000465_300 Hb_000465_300 Hb_163256_020--Hb_000465_300 Hb_006256_030 Hb_006256_030 Hb_163256_020--Hb_006256_030 Hb_158445_010 Hb_158445_010 Hb_163256_020--Hb_158445_010 Hb_163256_020--Hb_022318_020 Hb_000310_020 Hb_000310_020 Hb_163256_020--Hb_000310_020 Hb_000448_050--Hb_022318_020 Hb_000448_050--Hb_000398_100 Hb_004223_030 Hb_004223_030 Hb_000448_050--Hb_004223_030 Hb_003657_010 Hb_003657_010 Hb_000448_050--Hb_003657_010 Hb_001825_060 Hb_001825_060 Hb_000448_050--Hb_001825_060 Hb_005162_060--Hb_158445_010 Hb_000327_060 Hb_000327_060 Hb_005162_060--Hb_000327_060 Hb_009803_050 Hb_009803_050 Hb_005162_060--Hb_009803_050 Hb_001514_120 Hb_001514_120 Hb_005162_060--Hb_001514_120 Hb_003038_240 Hb_003038_240 Hb_005162_060--Hb_003038_240 Hb_000424_200 Hb_000424_200 Hb_005162_060--Hb_000424_200 Hb_002701_010 Hb_002701_010 Hb_022318_020--Hb_002701_010 Hb_022318_020--Hb_006256_030 Hb_001016_100 Hb_001016_100 Hb_022318_020--Hb_001016_100 Hb_004712_210 Hb_004712_210 Hb_002534_100--Hb_004712_210 Hb_002303_020 Hb_002303_020 Hb_002534_100--Hb_002303_020 Hb_044653_040 Hb_044653_040 Hb_002534_100--Hb_044653_040 Hb_010578_080 Hb_010578_080 Hb_002534_100--Hb_010578_080 Hb_000292_100 Hb_000292_100 Hb_002534_100--Hb_000292_100 Hb_062226_130 Hb_062226_130 Hb_002534_100--Hb_062226_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00332 6.13291 3.77863 3.36895 1.79366 1.41949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73189 7.31765 4.95611 2.87858 5.34376

CAGE analysis