Hb_003038_240

Information

Type -
Description -
Location Contig3038: 132122-135535
Sequence    

Annotation

kegg
ID rcu:RCOM_0535030
description hypothetical protein
nr
ID XP_002521546.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NQL6
description Lipid phosphate phosphatase epsilon 2, chloroplastic OS=Arabidopsis thaliana GN=LPPE2 PE=1 SV=1
trembl
ID B9S6C7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0535030 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lipid phosphate phosphatase epsilon chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32059: 132193-135355 , PASA_asmbl_32060: 133064-133267 , PASA_asmbl_32061: 133539-133807
cDNA
(Sanger)
(ID:Location)		 029_I10.ab1: 132643-135350

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012114_070 0.0753818594 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
3 Hb_005162_060 0.0828986042 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
4 Hb_003124_150 0.089292225 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
5 Hb_158445_010 0.0908449021 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
6 Hb_000729_030 0.0928332997 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
7 Hb_000336_150 0.0932243864 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
8 Hb_000614_160 0.093671505 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
9 Hb_000510_290 0.0953255491 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
10 Hb_001246_110 0.0974799108 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
11 Hb_007760_040 0.0991018949 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
12 Hb_000614_220 0.0991531632 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
13 Hb_001514_120 0.1013736411 - - hypothetical protein VITISV_015004 [Vitis vinifera]
14 Hb_002311_360 0.1071348181 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
15 Hb_000327_060 0.1076463843 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
16 Hb_002043_030 0.1083969072 - - hypothetical protein RCOM_1486170 [Ricinus communis]
17 Hb_000310_020 0.1097785201 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
18 Hb_000261_020 0.1101545351 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
19 Hb_000155_200 0.1108103426 - - Rab7 [Hevea brasiliensis]
20 Hb_001648_030 0.1110582233 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003038_240 Hb_003038_240 Hb_012114_070 Hb_012114_070 Hb_003038_240--Hb_012114_070 Hb_005162_060 Hb_005162_060 Hb_003038_240--Hb_005162_060 Hb_003124_150 Hb_003124_150 Hb_003038_240--Hb_003124_150 Hb_158445_010 Hb_158445_010 Hb_003038_240--Hb_158445_010 Hb_000729_030 Hb_000729_030 Hb_003038_240--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003038_240--Hb_000336_150 Hb_018133_020 Hb_018133_020 Hb_012114_070--Hb_018133_020 Hb_000155_200 Hb_000155_200 Hb_012114_070--Hb_000155_200 Hb_000614_220 Hb_000614_220 Hb_012114_070--Hb_000614_220 Hb_000614_160 Hb_000614_160 Hb_012114_070--Hb_000614_160 Hb_004157_020 Hb_004157_020 Hb_012114_070--Hb_004157_020 Hb_005162_060--Hb_158445_010 Hb_000327_060 Hb_000327_060 Hb_005162_060--Hb_000327_060 Hb_009803_050 Hb_009803_050 Hb_005162_060--Hb_009803_050 Hb_001514_120 Hb_001514_120 Hb_005162_060--Hb_001514_120 Hb_000424_200 Hb_000424_200 Hb_005162_060--Hb_000424_200 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_003124_150--Hb_000729_030 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020 Hb_158445_010--Hb_000327_060 Hb_004324_090 Hb_004324_090 Hb_158445_010--Hb_004324_090 Hb_004143_150 Hb_004143_150 Hb_158445_010--Hb_004143_150 Hb_158445_010--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_158445_010--Hb_163256_020 Hb_000869_080 Hb_000869_080 Hb_000729_030--Hb_000869_080 Hb_000261_020 Hb_000261_020 Hb_000729_030--Hb_000261_020 Hb_000729_030--Hb_000336_150 Hb_013358_040 Hb_013358_040 Hb_000729_030--Hb_013358_040 Hb_010368_010 Hb_010368_010 Hb_000729_030--Hb_010368_010 Hb_007304_120 Hb_007304_120 Hb_000336_150--Hb_007304_120 Hb_006615_240 Hb_006615_240 Hb_000336_150--Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_000336_150--Hb_003582_060 Hb_000205_090 Hb_000205_090 Hb_000336_150--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000336_150--Hb_004109_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5412 35.817 37.7314 27.6648 22.1649 16.1594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7261 71.8207 50.0328 16.3055 49.6502

CAGE analysis