Hb_001604_150

Information

Type -
Description -
Location Contig1604: 163620-167205
Sequence    

Annotation

kegg
ID cic:CICLE_v10008185mg
description hypothetical protein
nr
ID XP_010279101.1
description PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
swissprot
ID Q9LKA5
description Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MORF8 PE=1 SV=1
trembl
ID V4UFT5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008185mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14363: 163588-167574
cDNA
(Sanger)
(ID:Location)		 008_O24.ab1: 163588-166550 , 045_L09.ab1: 163588-166544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_150 0.0 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
2 Hb_002307_310 0.1139144688 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
3 Hb_031910_020 0.1213379211 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
4 Hb_002631_180 0.1353493442 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
5 Hb_000215_360 0.1355638853 - - Uncharacterized protein isoform 2 [Theobroma cacao]
6 Hb_000009_050 0.136613749 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
7 Hb_004429_020 0.1375685907 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
8 Hb_000251_030 0.1382091825 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_001242_130 0.1385454252 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
10 Hb_002701_010 0.1401085538 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_001171_050 0.1407989092 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
12 Hb_007218_120 0.1417224267 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
13 Hb_001341_100 0.1433833259 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
14 Hb_004993_060 0.1434927787 - - -
15 Hb_000603_080 0.1458916134 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
16 Hb_024468_010 0.1461248292 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
17 Hb_023771_010 0.1462041842 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
18 Hb_000684_040 0.1466579354 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
19 Hb_022318_020 0.1474636569 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
20 Hb_000086_630 0.1480339294 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001604_150 Hb_001604_150 Hb_002307_310 Hb_002307_310 Hb_001604_150--Hb_002307_310 Hb_031910_020 Hb_031910_020 Hb_001604_150--Hb_031910_020 Hb_002631_180 Hb_002631_180 Hb_001604_150--Hb_002631_180 Hb_000215_360 Hb_000215_360 Hb_001604_150--Hb_000215_360 Hb_000009_050 Hb_000009_050 Hb_001604_150--Hb_000009_050 Hb_004429_020 Hb_004429_020 Hb_001604_150--Hb_004429_020 Hb_004712_210 Hb_004712_210 Hb_002307_310--Hb_004712_210 Hb_022318_020 Hb_022318_020 Hb_002307_310--Hb_022318_020 Hb_002701_010 Hb_002701_010 Hb_002307_310--Hb_002701_010 Hb_015183_060 Hb_015183_060 Hb_002307_310--Hb_015183_060 Hb_006355_040 Hb_006355_040 Hb_002307_310--Hb_006355_040 Hb_004993_060 Hb_004993_060 Hb_031910_020--Hb_004993_060 Hb_000603_080 Hb_000603_080 Hb_031910_020--Hb_000603_080 Hb_001314_070 Hb_001314_070 Hb_031910_020--Hb_001314_070 Hb_000549_040 Hb_000549_040 Hb_031910_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_031910_020--Hb_001504_330 Hb_002799_040 Hb_002799_040 Hb_031910_020--Hb_002799_040 Hb_000922_040 Hb_000922_040 Hb_002631_180--Hb_000922_040 Hb_002016_080 Hb_002016_080 Hb_002631_180--Hb_002016_080 Hb_000136_350 Hb_000136_350 Hb_002631_180--Hb_000136_350 Hb_002239_050 Hb_002239_050 Hb_002631_180--Hb_002239_050 Hb_163256_020 Hb_163256_020 Hb_002631_180--Hb_163256_020 Hb_003994_260 Hb_003994_260 Hb_002631_180--Hb_003994_260 Hb_042474_010 Hb_042474_010 Hb_000215_360--Hb_042474_010 Hb_000190_090 Hb_000190_090 Hb_000215_360--Hb_000190_090 Hb_016347_010 Hb_016347_010 Hb_000215_360--Hb_016347_010 Hb_001728_140 Hb_001728_140 Hb_000215_360--Hb_001728_140 Hb_073171_100 Hb_073171_100 Hb_000215_360--Hb_073171_100 Hb_001691_200 Hb_001691_200 Hb_000215_360--Hb_001691_200 Hb_000304_030 Hb_000304_030 Hb_000009_050--Hb_000304_030 Hb_000009_050--Hb_002701_010 Hb_000009_050--Hb_002307_310 Hb_000684_040 Hb_000684_040 Hb_000009_050--Hb_000684_040 Hb_000009_050--Hb_002631_180 Hb_003913_130 Hb_003913_130 Hb_004429_020--Hb_003913_130 Hb_000140_090 Hb_000140_090 Hb_004429_020--Hb_000140_090 Hb_001635_190 Hb_001635_190 Hb_004429_020--Hb_001635_190 Hb_002119_130 Hb_002119_130 Hb_004429_020--Hb_002119_130 Hb_010578_080 Hb_010578_080 Hb_004429_020--Hb_010578_080 Hb_000964_030 Hb_000964_030 Hb_004429_020--Hb_000964_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1649 26.2303 20.0985 22.4305 6.81064 7.39203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6212 47.3329 44.69 44.6164 40.3346

CAGE analysis