Hb_017491_020

Information

Type -
Description -
Location Contig17491: 18418-20378
Sequence    

Annotation

kegg
ID rcu:RCOM_1264680
description 40S ribosomal protein sa, putative
nr
ID KJB70074.1
description hypothetical protein B456_011G056700 [Gossypium raimondii]
swissprot
ID O65751
description 40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1
trembl
ID A0A0D2UN23
description 40S ribosomal protein SA OS=Gossypium raimondii GN=B456_011G056700 PE=3 SV=1
Gene Ontology
ID GO:0022627
description 40s ribosomal protein sa-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16653: 18384-20367 , PASA_asmbl_16655: 18510-29829
cDNA
(Sanger)
(ID:Location)		 005_A14.ab1: 18962-20367 , 006_D04.ab1: 18964-20367 , 013_D12.ab1: 19505-20320 , 020_M23.ab1: 19457-20367 , 025_M03.ab1: 18952-20367 , 033_K13.ab1: 19433-20367 , 037_J12.ab1: 19011-20367

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017491_020 0.0 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
2 Hb_000077_180 0.0964133025 - - -
3 Hb_000136_350 0.0998057079 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
4 Hb_186982_040 0.1036030866 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
5 Hb_000377_120 0.1070638939 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_000163_050 0.1137563087 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
7 Hb_000210_060 0.1199263561 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
8 Hb_004005_020 0.1228982447 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_168893_020 0.1256962849 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
10 Hb_003098_020 0.126774778 - - 40S ribosomal protein S5B [Hevea brasiliensis]
11 Hb_004109_340 0.1267844444 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
12 Hb_001623_060 0.1269683861 - - potassium channel beta, putative [Ricinus communis]
13 Hb_002768_090 0.1279023907 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
14 Hb_000538_120 0.1285191642 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
15 Hb_006538_090 0.1336893283 - - PREDICTED: IST1 homolog [Jatropha curcas]
16 Hb_000136_260 0.1343766108 - - 40S ribosomal protein S5A [Hevea brasiliensis]
17 Hb_016522_010 0.1350647416 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
18 Hb_000555_100 0.1362077278 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
19 Hb_000210_120 0.1362277628 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
20 Hb_000015_030 0.138721257 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]

Gene co-expression network

sample Hb_017491_020 Hb_017491_020 Hb_000077_180 Hb_000077_180 Hb_017491_020--Hb_000077_180 Hb_000136_350 Hb_000136_350 Hb_017491_020--Hb_000136_350 Hb_186982_040 Hb_186982_040 Hb_017491_020--Hb_186982_040 Hb_000377_120 Hb_000377_120 Hb_017491_020--Hb_000377_120 Hb_000163_050 Hb_000163_050 Hb_017491_020--Hb_000163_050 Hb_000210_060 Hb_000210_060 Hb_017491_020--Hb_000210_060 Hb_000077_180--Hb_000377_120 Hb_001410_060 Hb_001410_060 Hb_000077_180--Hb_001410_060 Hb_005460_060 Hb_005460_060 Hb_000077_180--Hb_005460_060 Hb_000110_120 Hb_000110_120 Hb_000077_180--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_000077_180--Hb_000009_290 Hb_000136_350--Hb_186982_040 Hb_003098_020 Hb_003098_020 Hb_000136_350--Hb_003098_020 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000538_120 Hb_000538_120 Hb_000136_350--Hb_000538_120 Hb_000136_350--Hb_000377_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020 Hb_186982_040--Hb_003098_020 Hb_186982_040--Hb_000538_120 Hb_007928_030 Hb_007928_030 Hb_186982_040--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_186982_040--Hb_005307_050 Hb_004109_340 Hb_004109_340 Hb_186982_040--Hb_004109_340 Hb_000377_120--Hb_001410_060 Hb_000116_040 Hb_000116_040 Hb_000377_120--Hb_000116_040 Hb_000922_040 Hb_000922_040 Hb_000377_120--Hb_000922_040 Hb_000377_120--Hb_186982_040 Hb_009075_010 Hb_009075_010 Hb_000163_050--Hb_009075_010 Hb_000085_350 Hb_000085_350 Hb_000163_050--Hb_000085_350 Hb_003020_150 Hb_003020_150 Hb_000163_050--Hb_003020_150 Hb_000163_050--Hb_000538_120 Hb_000739_140 Hb_000739_140 Hb_000163_050--Hb_000739_140 Hb_000413_280 Hb_000413_280 Hb_000163_050--Hb_000413_280 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_168893_020 Hb_168893_020 Hb_000210_060--Hb_168893_020 Hb_002477_290 Hb_002477_290 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_005276_040 Hb_005276_040 Hb_000210_060--Hb_005276_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4907 21.1679 37.266 57.65 11.4334 21.0665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.7762 90.8606 28.1946 80.6691 24.2007

CAGE analysis