Hb_006922_060

Information

Type -
Description -
Location Contig6922: 85294-91011
Sequence    

Annotation

kegg
ID rcu:RCOM_1243080
description calcineurin B, putative
nr
ID XP_002516680.1
description calcineurin B, putative [Ricinus communis]
swissprot
ID O81223
description Calcineurin B-like protein 4 OS=Arabidopsis thaliana GN=CBL4 PE=1 SV=3
trembl
ID B9RSG1
description Calcineurin B, putative OS=Ricinus communis GN=RCOM_1243080 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcineurin b-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54480: 86773-90795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_060 0.0 - - calcineurin B, putative [Ricinus communis]
2 Hb_002798_010 0.195855863 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
3 Hb_005333_150 0.2150776346 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
4 Hb_009780_080 0.2586918786 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_002180_010 0.2783886405 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_079268_010 0.2823242842 - - -
7 Hb_003226_160 0.2862940675 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
8 Hb_137068_010 0.2874418616 - - hypothetical protein CISIN_1g003571mg [Citrus sinensis]
9 Hb_003038_170 0.288218668 - - conserved hypothetical protein [Ricinus communis]
10 Hb_155092_010 0.3100071799 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
11 Hb_000796_250 0.3138813066 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
12 Hb_037063_010 0.3180352938 - - -
13 Hb_138585_110 0.3181574695 - - -
14 Hb_007317_080 0.3190472129 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
15 Hb_132998_020 0.3191387354 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
16 Hb_002236_050 0.3217530884 - - -
17 Hb_001117_070 0.3224109881 - - 30S ribosomal protein S19, putative [Ricinus communis]
18 Hb_000096_130 0.3228320501 - - hypothetical protein 23 [Hevea brasiliensis]
19 Hb_005568_080 0.3237071409 - - conserved hypothetical protein [Ricinus communis]
20 Hb_094437_060 0.3250655642 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]

Gene co-expression network

sample Hb_006922_060 Hb_006922_060 Hb_002798_010 Hb_002798_010 Hb_006922_060--Hb_002798_010 Hb_005333_150 Hb_005333_150 Hb_006922_060--Hb_005333_150 Hb_009780_080 Hb_009780_080 Hb_006922_060--Hb_009780_080 Hb_002180_010 Hb_002180_010 Hb_006922_060--Hb_002180_010 Hb_079268_010 Hb_079268_010 Hb_006922_060--Hb_079268_010 Hb_003226_160 Hb_003226_160 Hb_006922_060--Hb_003226_160 Hb_002798_010--Hb_005333_150 Hb_002798_010--Hb_003226_160 Hb_094437_060 Hb_094437_060 Hb_002798_010--Hb_094437_060 Hb_003750_030 Hb_003750_030 Hb_002798_010--Hb_003750_030 Hb_002236_050 Hb_002236_050 Hb_002798_010--Hb_002236_050 Hb_005333_150--Hb_003226_160 Hb_000243_140 Hb_000243_140 Hb_005333_150--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_005333_150--Hb_007451_020 Hb_001117_070 Hb_001117_070 Hb_005333_150--Hb_001117_070 Hb_132998_020 Hb_132998_020 Hb_009780_080--Hb_132998_020 Hb_001507_100 Hb_001507_100 Hb_009780_080--Hb_001507_100 Hb_008983_010 Hb_008983_010 Hb_009780_080--Hb_008983_010 Hb_009780_080--Hb_079268_010 Hb_089497_010 Hb_089497_010 Hb_009780_080--Hb_089497_010 Hb_138585_110 Hb_138585_110 Hb_009780_080--Hb_138585_110 Hb_117240_010 Hb_117240_010 Hb_002180_010--Hb_117240_010 Hb_000829_080 Hb_000829_080 Hb_002180_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_002180_010--Hb_010288_040 Hb_003398_030 Hb_003398_030 Hb_002180_010--Hb_003398_030 Hb_008289_050 Hb_008289_050 Hb_002180_010--Hb_008289_050 Hb_079268_010--Hb_132998_020 Hb_013839_010 Hb_013839_010 Hb_079268_010--Hb_013839_010 Hb_137068_010 Hb_137068_010 Hb_079268_010--Hb_137068_010 Hb_005568_080 Hb_005568_080 Hb_079268_010--Hb_005568_080 Hb_003446_050 Hb_003446_050 Hb_079268_010--Hb_003446_050 Hb_000317_400 Hb_000317_400 Hb_079268_010--Hb_000317_400 Hb_002896_080 Hb_002896_080 Hb_003226_160--Hb_002896_080 Hb_003226_160--Hb_000243_140 Hb_001863_090 Hb_001863_090 Hb_003226_160--Hb_001863_090 Hb_000907_170 Hb_000907_170 Hb_003226_160--Hb_000907_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22778 1.55836 0.188128 0.694556 0.266063 0.269729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08432 6.81259 0 7.65472 0.0617635

CAGE analysis