Hb_000317_400

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig317: 273173-274006
Sequence    

Annotation

kegg
ID rcu:RCOM_1176860
description hypothetical protein
nr
ID XP_002518018.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M9S0
description Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana GN=ZHD4 PE=1 SV=1
trembl
ID B9RW99
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1176860 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc-finger homeodomain protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33408: 272614-276468 , PASA_asmbl_33410: 274205-275471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_400 0.0 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
2 Hb_000329_250 0.1194693451 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
3 Hb_000923_050 0.1364844433 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
4 Hb_001136_010 0.1369747471 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
5 Hb_000742_110 0.1494608195 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
6 Hb_001824_010 0.1559419958 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
7 Hb_001277_320 0.1565529716 - - Stem-specific protein TSJT1, putative [Ricinus communis]
8 Hb_006698_030 0.1569121108 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
9 Hb_021056_020 0.1578524321 - - plasma membrane H+-ATPase [Hevea brasiliensis]
10 Hb_000317_410 0.1589961315 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
11 Hb_008699_020 0.1623233535 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
12 Hb_004230_040 0.1630748015 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007432_020 0.1633606446 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
14 Hb_000329_650 0.1642339114 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
15 Hb_003683_040 0.1644624203 - - unnamed protein product [Coffea canephora]
16 Hb_001427_110 0.1661222894 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
17 Hb_000318_100 0.166683493 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
18 Hb_001653_020 0.1673976188 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
19 Hb_002828_040 0.1690225431 - - transmembrane protein, putative [Medicago truncatula]
20 Hb_001700_020 0.1704881081 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_400 Hb_000317_400 Hb_000329_250 Hb_000329_250 Hb_000317_400--Hb_000329_250 Hb_000923_050 Hb_000923_050 Hb_000317_400--Hb_000923_050 Hb_001136_010 Hb_001136_010 Hb_000317_400--Hb_001136_010 Hb_000742_110 Hb_000742_110 Hb_000317_400--Hb_000742_110 Hb_001824_010 Hb_001824_010 Hb_000317_400--Hb_001824_010 Hb_001277_320 Hb_001277_320 Hb_000317_400--Hb_001277_320 Hb_000496_120 Hb_000496_120 Hb_000329_250--Hb_000496_120 Hb_006698_030 Hb_006698_030 Hb_000329_250--Hb_006698_030 Hb_000329_250--Hb_001136_010 Hb_165669_010 Hb_165669_010 Hb_000329_250--Hb_165669_010 Hb_001653_020 Hb_001653_020 Hb_000329_250--Hb_001653_020 Hb_011828_020 Hb_011828_020 Hb_000923_050--Hb_011828_020 Hb_000329_650 Hb_000329_650 Hb_000923_050--Hb_000329_650 Hb_000395_080 Hb_000395_080 Hb_000923_050--Hb_000395_080 Hb_007441_230 Hb_007441_230 Hb_000923_050--Hb_007441_230 Hb_000696_340 Hb_000696_340 Hb_000923_050--Hb_000696_340 Hb_002333_080 Hb_002333_080 Hb_000923_050--Hb_002333_080 Hb_001054_100 Hb_001054_100 Hb_001136_010--Hb_001054_100 Hb_000135_060 Hb_000135_060 Hb_001136_010--Hb_000135_060 Hb_001136_010--Hb_001824_010 Hb_001136_010--Hb_001653_020 Hb_008695_050 Hb_008695_050 Hb_001136_010--Hb_008695_050 Hb_010560_040 Hb_010560_040 Hb_000742_110--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000742_110--Hb_003097_210 Hb_181600_010 Hb_181600_010 Hb_000742_110--Hb_181600_010 Hb_155764_010 Hb_155764_010 Hb_000742_110--Hb_155764_010 Hb_000865_070 Hb_000865_070 Hb_000742_110--Hb_000865_070 Hb_048476_050 Hb_048476_050 Hb_000742_110--Hb_048476_050 Hb_008695_040 Hb_008695_040 Hb_001824_010--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_001824_010--Hb_001421_060 Hb_076693_030 Hb_076693_030 Hb_001824_010--Hb_076693_030 Hb_002596_040 Hb_002596_040 Hb_001824_010--Hb_002596_040 Hb_000840_190 Hb_000840_190 Hb_001824_010--Hb_000840_190 Hb_008699_020 Hb_008699_020 Hb_001824_010--Hb_008699_020 Hb_000010_460 Hb_000010_460 Hb_001277_320--Hb_000010_460 Hb_008771_030 Hb_008771_030 Hb_001277_320--Hb_008771_030 Hb_001722_100 Hb_001722_100 Hb_001277_320--Hb_001722_100 Hb_002061_040 Hb_002061_040 Hb_001277_320--Hb_002061_040 Hb_003787_010 Hb_003787_010 Hb_001277_320--Hb_003787_010 Hb_002216_040 Hb_002216_040 Hb_001277_320--Hb_002216_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.592469 0.722892 0.324677 0.741114 0.610529 1.17682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.93865 2.31078 0.820852 2.39595 0.101246

CAGE analysis