Hb_000135_060

Information

Type transcription factor
Description TF Family: MED6
Location Contig135: 109202-112522
Sequence    

Annotation

kegg
ID rcu:RCOM_1486710
description RNA polymerase II mediator complex subunit, putative
nr
ID XP_012069047.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
swissprot
ID F4IXJ7
description Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana GN=MED6 PE=1 SV=1
trembl
ID A0A067L0T1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24822 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09858: 109373-112514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000135_060 0.0 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
2 Hb_005736_060 0.0871905593 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
3 Hb_015807_040 0.0902986424 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
4 Hb_002061_040 0.0920284889 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
5 Hb_000331_450 0.0929070922 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
6 Hb_002284_240 0.0931121039 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
7 Hb_004724_340 0.0972520814 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
8 Hb_159809_020 0.0977609289 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001360_050 0.0979919564 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
10 Hb_000707_030 0.1005635028 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
11 Hb_003599_040 0.102241167 - - unnamed protein product [Vitis vinifera]
12 Hb_001369_690 0.1024818368 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
13 Hb_000125_190 0.1036272427 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
14 Hb_000009_460 0.1055422373 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002805_220 0.1064754401 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
16 Hb_004216_050 0.1070788813 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
17 Hb_001824_010 0.1078660876 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
18 Hb_002963_010 0.1081921728 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
19 Hb_006816_210 0.1090036101 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
20 Hb_001653_020 0.1090921151 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000135_060 Hb_000135_060 Hb_005736_060 Hb_005736_060 Hb_000135_060--Hb_005736_060 Hb_015807_040 Hb_015807_040 Hb_000135_060--Hb_015807_040 Hb_002061_040 Hb_002061_040 Hb_000135_060--Hb_002061_040 Hb_000331_450 Hb_000331_450 Hb_000135_060--Hb_000331_450 Hb_002284_240 Hb_002284_240 Hb_000135_060--Hb_002284_240 Hb_004724_340 Hb_004724_340 Hb_000135_060--Hb_004724_340 Hb_000307_090 Hb_000307_090 Hb_005736_060--Hb_000307_090 Hb_159809_020 Hb_159809_020 Hb_005736_060--Hb_159809_020 Hb_001421_060 Hb_001421_060 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_001616_040 Hb_001616_040 Hb_005736_060--Hb_001616_040 Hb_002963_010 Hb_002963_010 Hb_005736_060--Hb_002963_010 Hb_015807_040--Hb_000331_450 Hb_010042_010 Hb_010042_010 Hb_015807_040--Hb_010042_010 Hb_006816_210 Hb_006816_210 Hb_015807_040--Hb_006816_210 Hb_001833_110 Hb_001833_110 Hb_015807_040--Hb_001833_110 Hb_015807_040--Hb_159809_020 Hb_001832_010 Hb_001832_010 Hb_015807_040--Hb_001832_010 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_001519_050 Hb_001519_050 Hb_002061_040--Hb_001519_050 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040 Hb_000331_450--Hb_010042_010 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_003599_040 Hb_003599_040 Hb_002284_240--Hb_003599_040 Hb_002284_240--Hb_159809_020 Hb_000926_250 Hb_000926_250 Hb_002284_240--Hb_000926_250 Hb_000007_100 Hb_000007_100 Hb_002284_240--Hb_000007_100 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_000327_190 Hb_000327_190 Hb_002284_240--Hb_000327_190 Hb_001360_050 Hb_001360_050 Hb_004724_340--Hb_001360_050 Hb_010080_090 Hb_010080_090 Hb_004724_340--Hb_010080_090 Hb_012675_060 Hb_012675_060 Hb_004724_340--Hb_012675_060 Hb_004724_340--Hb_001833_110 Hb_000347_410 Hb_000347_410 Hb_004724_340--Hb_000347_410 Hb_002471_080 Hb_002471_080 Hb_004724_340--Hb_002471_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91526 10.4904 6.60586 14.9599 18.5728 21.7294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2592 39.2575 23.3183 20.8954 9.56346

CAGE analysis