Hb_165669_010

Information

Type -
Description -
Location Contig165669: 1597-2531
Sequence    

Annotation

kegg
ID gmx:100809118
description uncharacterized LOC100809118
nr
ID XP_012066140.1
description PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID A0A067LF79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22127 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin carboxyl-terminal hydrolase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165669_010 0.0 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
2 Hb_009510_040 0.1107068957 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
3 Hb_000329_250 0.1144786431 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
4 Hb_000496_120 0.1233283941 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
5 Hb_000215_060 0.1268716673 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
6 Hb_008173_110 0.128892135 - - DNA binding protein, putative [Ricinus communis]
7 Hb_008771_030 0.1290030563 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
8 Hb_007850_080 0.1315332484 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
9 Hb_012114_040 0.1334660765 - - DNA binding protein, putative [Ricinus communis]
10 Hb_003442_070 0.1340904061 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
11 Hb_000005_080 0.1349547626 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
12 Hb_006698_030 0.1360433672 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
13 Hb_033642_080 0.1378760324 - - V-type proton ATPase subunit E [Hevea brasiliensis]
14 Hb_034406_030 0.1383920694 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
15 Hb_009113_050 0.1387940178 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
16 Hb_002577_010 0.1397394446 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
17 Hb_001663_050 0.1399035568 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
18 Hb_000175_540 0.1400716938 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
19 Hb_004453_050 0.1404969988 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
20 Hb_003972_080 0.1424916774 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_165669_010 Hb_165669_010 Hb_009510_040 Hb_009510_040 Hb_165669_010--Hb_009510_040 Hb_000329_250 Hb_000329_250 Hb_165669_010--Hb_000329_250 Hb_000496_120 Hb_000496_120 Hb_165669_010--Hb_000496_120 Hb_000215_060 Hb_000215_060 Hb_165669_010--Hb_000215_060 Hb_008173_110 Hb_008173_110 Hb_165669_010--Hb_008173_110 Hb_008771_030 Hb_008771_030 Hb_165669_010--Hb_008771_030 Hb_000243_140 Hb_000243_140 Hb_009510_040--Hb_000243_140 Hb_000503_050 Hb_000503_050 Hb_009510_040--Hb_000503_050 Hb_000003_050 Hb_000003_050 Hb_009510_040--Hb_000003_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_000329_250--Hb_000496_120 Hb_006698_030 Hb_006698_030 Hb_000329_250--Hb_006698_030 Hb_001136_010 Hb_001136_010 Hb_000329_250--Hb_001136_010 Hb_000317_400 Hb_000317_400 Hb_000329_250--Hb_000317_400 Hb_001653_020 Hb_001653_020 Hb_000329_250--Hb_001653_020 Hb_000496_120--Hb_000215_060 Hb_091433_020 Hb_091433_020 Hb_000496_120--Hb_091433_020 Hb_033642_080 Hb_033642_080 Hb_000496_120--Hb_033642_080 Hb_004216_050 Hb_004216_050 Hb_000496_120--Hb_004216_050 Hb_001814_050 Hb_001814_050 Hb_000496_120--Hb_001814_050 Hb_005305_150 Hb_005305_150 Hb_000496_120--Hb_005305_150 Hb_000363_480 Hb_000363_480 Hb_000215_060--Hb_000363_480 Hb_001565_080 Hb_001565_080 Hb_000215_060--Hb_001565_080 Hb_000175_060 Hb_000175_060 Hb_000215_060--Hb_000175_060 Hb_000349_290 Hb_000349_290 Hb_000215_060--Hb_000349_290 Hb_011173_050 Hb_011173_050 Hb_000215_060--Hb_011173_050 Hb_008173_110--Hb_001653_020 Hb_003994_260 Hb_003994_260 Hb_008173_110--Hb_003994_260 Hb_004453_050 Hb_004453_050 Hb_008173_110--Hb_004453_050 Hb_000069_420 Hb_000069_420 Hb_008173_110--Hb_000069_420 Hb_000210_120 Hb_000210_120 Hb_008173_110--Hb_000210_120 Hb_029584_050 Hb_029584_050 Hb_008173_110--Hb_029584_050 Hb_003787_010 Hb_003787_010 Hb_008771_030--Hb_003787_010 Hb_000111_330 Hb_000111_330 Hb_008771_030--Hb_000111_330 Hb_000525_020 Hb_000525_020 Hb_008771_030--Hb_000525_020 Hb_000684_270 Hb_000684_270 Hb_008771_030--Hb_000684_270 Hb_002518_080 Hb_002518_080 Hb_008771_030--Hb_002518_080 Hb_000417_360 Hb_000417_360 Hb_008771_030--Hb_000417_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2549 14.0195 3.8813 12.056 3.0325 9.03907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3221 30.3447 19.699 21.9628 3.60494

CAGE analysis