Hb_000503_050

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig503: 171234-174297
Sequence    

Annotation

kegg
ID rcu:RCOM_0643160
description phd/F-box containing protein, putative
nr
ID XP_012459176.1
description PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
swissprot
ID Q75IR6
description PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. japonica GN=Os05g0163100 PE=2 SV=1
trembl
ID A0A0D2V4B6
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G114500 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45914: 171224-174434
cDNA
(Sanger)
(ID:Location)		 004_P20.ab1: 171524-174434

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000503_050 0.0 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
2 Hb_002216_040 0.0621078625 - - PREDICTED: protein PRD1 [Jatropha curcas]
3 Hb_005699_070 0.0824656426 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
4 Hb_014720_080 0.0838869108 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
5 Hb_000193_290 0.0858158965 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
6 Hb_002056_060 0.087473384 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
7 Hb_000834_270 0.0917917977 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
8 Hb_003106_050 0.0936848627 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
9 Hb_000671_150 0.0940434607 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
10 Hb_006949_040 0.0972631854 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_001881_020 0.0984778682 - - clathrin binding protein, putative [Ricinus communis]
12 Hb_000025_120 0.0991917472 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
13 Hb_155764_010 0.0998878204 - - -
14 Hb_004678_050 0.1006634627 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
15 Hb_000805_020 0.1009091014 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
16 Hb_002301_230 0.1016406612 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
17 Hb_000111_360 0.1028885661 - - conserved hypothetical protein [Ricinus communis]
18 Hb_055062_030 0.1034335047 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
19 Hb_000613_140 0.1037175968 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
20 Hb_021650_030 0.104577497 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]

Gene co-expression network

sample Hb_000503_050 Hb_000503_050 Hb_002216_040 Hb_002216_040 Hb_000503_050--Hb_002216_040 Hb_005699_070 Hb_005699_070 Hb_000503_050--Hb_005699_070 Hb_014720_080 Hb_014720_080 Hb_000503_050--Hb_014720_080 Hb_000193_290 Hb_000193_290 Hb_000503_050--Hb_000193_290 Hb_002056_060 Hb_002056_060 Hb_000503_050--Hb_002056_060 Hb_000834_270 Hb_000834_270 Hb_000503_050--Hb_000834_270 Hb_002216_040--Hb_005699_070 Hb_002685_020 Hb_002685_020 Hb_002216_040--Hb_002685_020 Hb_002216_040--Hb_000834_270 Hb_000010_470 Hb_000010_470 Hb_002216_040--Hb_000010_470 Hb_004678_050 Hb_004678_050 Hb_002216_040--Hb_004678_050 Hb_126643_020 Hb_126643_020 Hb_005699_070--Hb_126643_020 Hb_002105_040 Hb_002105_040 Hb_005699_070--Hb_002105_040 Hb_005618_170 Hb_005618_170 Hb_005699_070--Hb_005618_170 Hb_002685_010 Hb_002685_010 Hb_005699_070--Hb_002685_010 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_014720_080--Hb_000834_270 Hb_008453_090 Hb_008453_090 Hb_000193_290--Hb_008453_090 Hb_006949_040 Hb_006949_040 Hb_000193_290--Hb_006949_040 Hb_000671_150 Hb_000671_150 Hb_000193_290--Hb_000671_150 Hb_055062_030 Hb_055062_030 Hb_000193_290--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_000193_290--Hb_003266_130 Hb_016065_010 Hb_016065_010 Hb_000193_290--Hb_016065_010 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_000834_270--Hb_000146_020 Hb_002963_010 Hb_002963_010 Hb_000834_270--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_000834_270--Hb_001722_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
180.338 108.197 33.6474 63.9966 81.9108 134.179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
227.938 242.081 235.024 124.745 44.4069

CAGE analysis