Hb_007451_020

Information

Type -
Description -
Location Contig7451: 10481-11356
Sequence    

Annotation

kegg
ID rcu:RCOM_0680800
description hypothetical protein
nr
ID XP_012083919.1
description PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18863 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007451_020 0.0 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
2 Hb_000640_300 0.1591446202 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
3 Hb_004242_190 0.1866933692 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
4 Hb_005625_060 0.1892531623 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
5 Hb_005333_150 0.1945648314 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
6 Hb_004800_070 0.204774076 - - -
7 Hb_000243_140 0.2049384883 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
8 Hb_000589_400 0.205784353 - - ESC, putative [Ricinus communis]
9 Hb_002896_080 0.2103193725 - - -
10 Hb_003226_160 0.2103555851 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
11 Hb_001789_080 0.2116475432 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
12 Hb_006816_200 0.2132241139 - - conserved hypothetical protein [Ricinus communis]
13 Hb_028872_060 0.2151962757 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
14 Hb_000258_350 0.217384576 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
15 Hb_005298_010 0.2177048665 - - -
16 Hb_003159_080 0.2177177164 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
17 Hb_002890_210 0.2208759726 - - PREDICTED: vinorine synthase-like [Jatropha curcas]
18 Hb_000010_250 0.2211893414 - - PREDICTED: protein tipD [Jatropha curcas]
19 Hb_002217_420 0.2227364654 - - hypothetical protein EUTSA_v10021493mg [Eutrema salsugineum]
20 Hb_002400_400 0.2235832161 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007451_020 Hb_007451_020 Hb_000640_300 Hb_000640_300 Hb_007451_020--Hb_000640_300 Hb_004242_190 Hb_004242_190 Hb_007451_020--Hb_004242_190 Hb_005625_060 Hb_005625_060 Hb_007451_020--Hb_005625_060 Hb_005333_150 Hb_005333_150 Hb_007451_020--Hb_005333_150 Hb_004800_070 Hb_004800_070 Hb_007451_020--Hb_004800_070 Hb_000243_140 Hb_000243_140 Hb_007451_020--Hb_000243_140 Hb_000589_400 Hb_000589_400 Hb_000640_300--Hb_000589_400 Hb_000640_300--Hb_000243_140 Hb_028872_060 Hb_028872_060 Hb_000640_300--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000640_300--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_000640_300--Hb_004230_040 Hb_001258_060 Hb_001258_060 Hb_004242_190--Hb_001258_060 Hb_004242_190--Hb_028872_060 Hb_000805_320 Hb_000805_320 Hb_004242_190--Hb_000805_320 Hb_006816_200 Hb_006816_200 Hb_004242_190--Hb_006816_200 Hb_002407_080 Hb_002407_080 Hb_004242_190--Hb_002407_080 Hb_003120_030 Hb_003120_030 Hb_004242_190--Hb_003120_030 Hb_000853_110 Hb_000853_110 Hb_005625_060--Hb_000853_110 Hb_001184_110 Hb_001184_110 Hb_005625_060--Hb_001184_110 Hb_007101_130 Hb_007101_130 Hb_005625_060--Hb_007101_130 Hb_015001_020 Hb_015001_020 Hb_005625_060--Hb_015001_020 Hb_000123_260 Hb_000123_260 Hb_005625_060--Hb_000123_260 Hb_027472_180 Hb_027472_180 Hb_005625_060--Hb_027472_180 Hb_003226_160 Hb_003226_160 Hb_005333_150--Hb_003226_160 Hb_005333_150--Hb_000243_140 Hb_002798_010 Hb_002798_010 Hb_005333_150--Hb_002798_010 Hb_006922_060 Hb_006922_060 Hb_005333_150--Hb_006922_060 Hb_001117_070 Hb_001117_070 Hb_005333_150--Hb_001117_070 Hb_172632_090 Hb_172632_090 Hb_004800_070--Hb_172632_090 Hb_003126_080 Hb_003126_080 Hb_004800_070--Hb_003126_080 Hb_154826_010 Hb_154826_010 Hb_004800_070--Hb_154826_010 Hb_000258_350 Hb_000258_350 Hb_004800_070--Hb_000258_350 Hb_004223_280 Hb_004223_280 Hb_004800_070--Hb_004223_280 Hb_003976_010 Hb_003976_010 Hb_004800_070--Hb_003976_010 Hb_009510_040 Hb_009510_040 Hb_000243_140--Hb_009510_040 Hb_000243_140--Hb_001117_070 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86535 1.45646 0.14414 0.134313 2.08111 1.47171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25857 3.72324 1.37469 4.26063 0.0954111

CAGE analysis