Hb_005625_060

Information

Type -
Description -
Location Contig5625: 83939-85601
Sequence    

Annotation

kegg
ID vvi:100266800
description SNF1-related protein kinase regulatory subunit beta-1
nr
ID XP_012074706.1
description PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
swissprot
ID Q84VQ1
description SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1
trembl
ID A0A067LMG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14907 PE=4 SV=1
Gene Ontology
ID GO:0050896
description snf1-related protein kinase regulatory subunit beta-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48874: 57633-84753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005625_060 0.0 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
2 Hb_000853_110 0.1161851265 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
3 Hb_001184_110 0.1281724168 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
4 Hb_007101_130 0.1293266874 - - conserved hypothetical protein [Ricinus communis]
5 Hb_015001_020 0.1378984624 - - PREDICTED: la-related protein 6B [Jatropha curcas]
6 Hb_000123_260 0.1451479798 - - PREDICTED: protein gar2 [Jatropha curcas]
7 Hb_027472_180 0.1505188357 - - hypothetical protein L484_016229 [Morus notabilis]
8 Hb_007747_090 0.1505357609 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
9 Hb_028486_040 0.1505568255 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_005298_010 0.1515986156 - - -
11 Hb_000856_340 0.1523370977 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
12 Hb_000866_300 0.1525842636 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
13 Hb_003638_030 0.1526918452 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
14 Hb_000532_070 0.1528546764 - - PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
15 Hb_003976_010 0.1533532423 - - methionine aminopeptidase, putative [Ricinus communis]
16 Hb_002097_110 0.1544637239 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000406_220 0.1546167622 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
18 Hb_000035_380 0.1550217549 - - -
19 Hb_007426_230 0.156510942 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
20 Hb_004662_030 0.1571683307 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]

Gene co-expression network

sample Hb_005625_060 Hb_005625_060 Hb_000853_110 Hb_000853_110 Hb_005625_060--Hb_000853_110 Hb_001184_110 Hb_001184_110 Hb_005625_060--Hb_001184_110 Hb_007101_130 Hb_007101_130 Hb_005625_060--Hb_007101_130 Hb_015001_020 Hb_015001_020 Hb_005625_060--Hb_015001_020 Hb_000123_260 Hb_000123_260 Hb_005625_060--Hb_000123_260 Hb_027472_180 Hb_027472_180 Hb_005625_060--Hb_027472_180 Hb_000853_110--Hb_015001_020 Hb_000032_570 Hb_000032_570 Hb_000853_110--Hb_000032_570 Hb_002762_060 Hb_002762_060 Hb_000853_110--Hb_002762_060 Hb_002272_250 Hb_002272_250 Hb_000853_110--Hb_002272_250 Hb_001030_120 Hb_001030_120 Hb_000853_110--Hb_001030_120 Hb_007426_230 Hb_007426_230 Hb_000853_110--Hb_007426_230 Hb_001184_110--Hb_007101_130 Hb_006846_110 Hb_006846_110 Hb_001184_110--Hb_006846_110 Hb_008453_090 Hb_008453_090 Hb_001184_110--Hb_008453_090 Hb_000671_150 Hb_000671_150 Hb_001184_110--Hb_000671_150 Hb_000935_050 Hb_000935_050 Hb_001184_110--Hb_000935_050 Hb_007672_010 Hb_007672_010 Hb_001184_110--Hb_007672_010 Hb_007101_130--Hb_007672_010 Hb_003018_200 Hb_003018_200 Hb_007101_130--Hb_003018_200 Hb_007101_130--Hb_027472_180 Hb_007101_130--Hb_008453_090 Hb_000376_050 Hb_000376_050 Hb_007101_130--Hb_000376_050 Hb_002097_110 Hb_002097_110 Hb_015001_020--Hb_002097_110 Hb_004662_030 Hb_004662_030 Hb_015001_020--Hb_004662_030 Hb_028872_140 Hb_028872_140 Hb_015001_020--Hb_028872_140 Hb_015001_020--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_015001_020--Hb_005062_070 Hb_004600_040 Hb_004600_040 Hb_000123_260--Hb_004600_040 Hb_000123_260--Hb_007426_230 Hb_000189_620 Hb_000189_620 Hb_000123_260--Hb_000189_620 Hb_001545_120 Hb_001545_120 Hb_000123_260--Hb_001545_120 Hb_003097_150 Hb_003097_150 Hb_000123_260--Hb_003097_150 Hb_004195_160 Hb_004195_160 Hb_000123_260--Hb_004195_160 Hb_027472_180--Hb_002097_110 Hb_000703_140 Hb_000703_140 Hb_027472_180--Hb_000703_140 Hb_027472_180--Hb_000376_050 Hb_027472_180--Hb_004662_030 Hb_027472_180--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58707 2.77356 0.433429 0.478169 8.16567 8.66553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.23011 11.3226 8.42153 6.96541 1.013

CAGE analysis