Hb_000853_110

Information

Type -
Description -
Location Contig853: 75373-77713
Sequence    

Annotation

kegg
ID cmo:103492800
description 60S ribosomal protein L19-1-like
nr
ID XP_012082823.1
description PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
swissprot
ID Q9LUQ6
description 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1
trembl
ID A0A067JW78
description Ribosomal protein L19 OS=Jatropha curcas GN=JCGZ_13972 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l19-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60467: 75313-77742 , PASA_asmbl_60468: 75540-75811 , PASA_asmbl_60469: 75545-75743
cDNA
(Sanger)
(ID:Location)		 005_L16.ab1: 75313-77588 , 016_K24.ab1: 75313-77533 , 038_L03.ab1: 75313-77658

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_110 0.0 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
2 Hb_015001_020 0.0678756625 - - PREDICTED: la-related protein 6B [Jatropha curcas]
3 Hb_000032_570 0.0764931313 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
4 Hb_002762_060 0.0807686852 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
5 Hb_002272_250 0.0821917053 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_001030_120 0.0825829493 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
7 Hb_007426_230 0.0841759725 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
8 Hb_003777_330 0.0849637619 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
9 Hb_005062_070 0.0860775484 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
10 Hb_002097_110 0.0862363283 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_082609_020 0.087614338 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004195_160 0.0876831166 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
13 Hb_003976_010 0.0885188342 - - methionine aminopeptidase, putative [Ricinus communis]
14 Hb_002375_020 0.0894700557 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
15 Hb_003777_270 0.0896328957 - - 60S ribosomal protein L3B [Hevea brasiliensis]
16 Hb_000923_020 0.0898545411 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
17 Hb_000554_020 0.0907500536 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
18 Hb_009111_050 0.0908192741 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
19 Hb_007101_130 0.0912819197 - - conserved hypothetical protein [Ricinus communis]
20 Hb_133271_020 0.0941031065 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000853_110 Hb_000853_110 Hb_015001_020 Hb_015001_020 Hb_000853_110--Hb_015001_020 Hb_000032_570 Hb_000032_570 Hb_000853_110--Hb_000032_570 Hb_002762_060 Hb_002762_060 Hb_000853_110--Hb_002762_060 Hb_002272_250 Hb_002272_250 Hb_000853_110--Hb_002272_250 Hb_001030_120 Hb_001030_120 Hb_000853_110--Hb_001030_120 Hb_007426_230 Hb_007426_230 Hb_000853_110--Hb_007426_230 Hb_002097_110 Hb_002097_110 Hb_015001_020--Hb_002097_110 Hb_004662_030 Hb_004662_030 Hb_015001_020--Hb_004662_030 Hb_028872_140 Hb_028872_140 Hb_015001_020--Hb_028872_140 Hb_015001_020--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_015001_020--Hb_005062_070 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_000032_570--Hb_001030_120 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_024835_030 Hb_024835_030 Hb_002762_060--Hb_024835_030 Hb_004221_010 Hb_004221_010 Hb_002762_060--Hb_004221_010 Hb_004920_040 Hb_004920_040 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_011794_090 Hb_011794_090 Hb_002272_250--Hb_011794_090 Hb_002272_250--Hb_003392_040 Hb_000017_120 Hb_000017_120 Hb_002272_250--Hb_000017_120 Hb_150069_020 Hb_150069_020 Hb_002272_250--Hb_150069_020 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_001030_120--Hb_005062_070 Hb_001030_120--Hb_028872_140 Hb_007426_230--Hb_004195_160 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_007426_230--Hb_001030_120 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1098.15 421.701 193.617 153.049 891.006 987.737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
858.785 1100.7 908.477 606.825 156.596

CAGE analysis