Hb_006816_200

Information

Type -
Description -
Location Contig6816: 142514-144251
Sequence    

Annotation

kegg
ID rcu:RCOM_1434750
description hypothetical protein
nr
ID XP_002512499.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O07552
description Stress response protein NhaX OS=Bacillus subtilis (strain 168) GN=nhaX PE=2 SV=2
trembl
ID B9RFI0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434750 PE=4 SV=1
Gene Ontology
ID GO:0016787
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53806: 143248-144273 , PASA_asmbl_53807: 143271-143931
cDNA
(Sanger)
(ID:Location)		 013_G04.ab1: 143250-144273 , 034_E17.ab1: 143250-144273

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002027_140 0.1101850587 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
3 Hb_004800_070 0.1107023269 - - -
4 Hb_006114_010 0.1112615048 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
5 Hb_000252_170 0.1281933107 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
6 Hb_009687_010 0.1381673678 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
7 Hb_002471_150 0.1388322406 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
8 Hb_172632_090 0.1394955142 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
9 Hb_009265_090 0.1423237136 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
10 Hb_005914_010 0.1467097114 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
11 Hb_001102_240 0.147051591 - - PREDICTED: NADH kinase isoform X1 [Jatropha curcas]
12 Hb_154826_010 0.1483928236 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_002028_220 0.1517744738 - - aminoadipic semialdehyde synthase, putative [Ricinus communis]
14 Hb_002197_050 0.1528027094 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
15 Hb_000028_590 0.1529624252 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
16 Hb_006502_070 0.1534960649 - - separase, putative [Ricinus communis]
17 Hb_001427_110 0.155681882 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
18 Hb_005725_270 0.1563419786 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
19 Hb_001758_100 0.1564462274 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
20 Hb_004242_190 0.1582662863 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006816_200 Hb_006816_200 Hb_002027_140 Hb_002027_140 Hb_006816_200--Hb_002027_140 Hb_004800_070 Hb_004800_070 Hb_006816_200--Hb_004800_070 Hb_006114_010 Hb_006114_010 Hb_006816_200--Hb_006114_010 Hb_000252_170 Hb_000252_170 Hb_006816_200--Hb_000252_170 Hb_009687_010 Hb_009687_010 Hb_006816_200--Hb_009687_010 Hb_002471_150 Hb_002471_150 Hb_006816_200--Hb_002471_150 Hb_002027_140--Hb_009687_010 Hb_109002_020 Hb_109002_020 Hb_002027_140--Hb_109002_020 Hb_004064_010 Hb_004064_010 Hb_002027_140--Hb_004064_010 Hb_002027_140--Hb_006114_010 Hb_003266_100 Hb_003266_100 Hb_002027_140--Hb_003266_100 Hb_172632_090 Hb_172632_090 Hb_004800_070--Hb_172632_090 Hb_003126_080 Hb_003126_080 Hb_004800_070--Hb_003126_080 Hb_154826_010 Hb_154826_010 Hb_004800_070--Hb_154826_010 Hb_000258_350 Hb_000258_350 Hb_004800_070--Hb_000258_350 Hb_004223_280 Hb_004223_280 Hb_004800_070--Hb_004223_280 Hb_003976_010 Hb_003976_010 Hb_004800_070--Hb_003976_010 Hb_000120_470 Hb_000120_470 Hb_006114_010--Hb_000120_470 Hb_010883_090 Hb_010883_090 Hb_006114_010--Hb_010883_090 Hb_005539_280 Hb_005539_280 Hb_006114_010--Hb_005539_280 Hb_086639_030 Hb_086639_030 Hb_006114_010--Hb_086639_030 Hb_000805_020 Hb_000805_020 Hb_006114_010--Hb_000805_020 Hb_000976_170 Hb_000976_170 Hb_006114_010--Hb_000976_170 Hb_000296_070 Hb_000296_070 Hb_000252_170--Hb_000296_070 Hb_000123_210 Hb_000123_210 Hb_000252_170--Hb_000123_210 Hb_031340_050 Hb_031340_050 Hb_000252_170--Hb_031340_050 Hb_000907_110 Hb_000907_110 Hb_000252_170--Hb_000907_110 Hb_001357_250 Hb_001357_250 Hb_000252_170--Hb_001357_250 Hb_000556_160 Hb_000556_160 Hb_000252_170--Hb_000556_160 Hb_000103_270 Hb_000103_270 Hb_009687_010--Hb_000103_270 Hb_005914_010 Hb_005914_010 Hb_009687_010--Hb_005914_010 Hb_105602_010 Hb_105602_010 Hb_009687_010--Hb_105602_010 Hb_006698_030 Hb_006698_030 Hb_009687_010--Hb_006698_030 Hb_000329_760 Hb_000329_760 Hb_009687_010--Hb_000329_760 Hb_002471_150--Hb_154826_010 Hb_002375_090 Hb_002375_090 Hb_002471_150--Hb_002375_090 Hb_009793_010 Hb_009793_010 Hb_002471_150--Hb_009793_010 Hb_002471_150--Hb_172632_090 Hb_002043_130 Hb_002043_130 Hb_002471_150--Hb_002043_130 Hb_002226_070 Hb_002226_070 Hb_002471_150--Hb_002226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6492 31.2422 26.3478 14.1564 43.9999 42.5743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.979 83.4682 49.5082 95.8512 9.0594

CAGE analysis