Hb_006114_010

Information

Type -
Description -
Location Contig6114: 8431-11309
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12210g
description POPTRDRAFT_548180; hypothetical protein
nr
ID XP_012065973.1
description PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
swissprot
ID Q9FIX3
description Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
trembl
ID A0A067LG57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50993: 8693-8910 , PASA_asmbl_50994: 8945-11306 , PASA_asmbl_50995: 9533-9805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006114_010 0.0 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
2 Hb_000120_470 0.09373822 - - hypothetical protein VITISV_017372 [Vitis vinifera]
3 Hb_010883_090 0.0951735549 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
4 Hb_005539_280 0.0952290966 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
5 Hb_086639_030 0.1013013294 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_000805_020 0.1029863994 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
7 Hb_000976_170 0.1030620557 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
8 Hb_007416_320 0.103602204 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000120_460 0.1037058413 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
10 Hb_001123_320 0.1042394841 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
11 Hb_001758_100 0.1053192891 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
12 Hb_001726_020 0.1057419362 - - PREDICTED: endophilin-A1 [Jatropha curcas]
13 Hb_108350_010 0.1072611725 - - GTP-binding protein erg, putative [Ricinus communis]
14 Hb_000556_160 0.1081794579 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
15 Hb_001663_050 0.1095050226 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
16 Hb_012490_070 0.1103232233 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000250_060 0.1104480758 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
18 Hb_006816_200 0.1112615048 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002481_080 0.1128596516 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
20 Hb_011485_070 0.1135036725 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006114_010 Hb_006114_010 Hb_000120_470 Hb_000120_470 Hb_006114_010--Hb_000120_470 Hb_010883_090 Hb_010883_090 Hb_006114_010--Hb_010883_090 Hb_005539_280 Hb_005539_280 Hb_006114_010--Hb_005539_280 Hb_086639_030 Hb_086639_030 Hb_006114_010--Hb_086639_030 Hb_000805_020 Hb_000805_020 Hb_006114_010--Hb_000805_020 Hb_000976_170 Hb_000976_170 Hb_006114_010--Hb_000976_170 Hb_001758_100 Hb_001758_100 Hb_000120_470--Hb_001758_100 Hb_008900_010 Hb_008900_010 Hb_000120_470--Hb_008900_010 Hb_007416_320 Hb_007416_320 Hb_000120_470--Hb_007416_320 Hb_005054_350 Hb_005054_350 Hb_000120_470--Hb_005054_350 Hb_058999_020 Hb_058999_020 Hb_000120_470--Hb_058999_020 Hb_000058_060 Hb_000058_060 Hb_000120_470--Hb_000058_060 Hb_002631_060 Hb_002631_060 Hb_010883_090--Hb_002631_060 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_010883_090--Hb_000805_020 Hb_003687_240 Hb_003687_240 Hb_010883_090--Hb_003687_240 Hb_001892_020 Hb_001892_020 Hb_010883_090--Hb_001892_020 Hb_004907_110 Hb_004907_110 Hb_010883_090--Hb_004907_110 Hb_001726_020 Hb_001726_020 Hb_005539_280--Hb_001726_020 Hb_000504_140 Hb_000504_140 Hb_005539_280--Hb_000504_140 Hb_000250_060 Hb_000250_060 Hb_005539_280--Hb_000250_060 Hb_005539_280--Hb_058999_020 Hb_001633_050 Hb_001633_050 Hb_005539_280--Hb_001633_050 Hb_005779_060 Hb_005779_060 Hb_005539_280--Hb_005779_060 Hb_001663_050 Hb_001663_050 Hb_086639_030--Hb_001663_050 Hb_005463_040 Hb_005463_040 Hb_086639_030--Hb_005463_040 Hb_086639_030--Hb_007416_320 Hb_172932_010 Hb_172932_010 Hb_086639_030--Hb_172932_010 Hb_003053_020 Hb_003053_020 Hb_086639_030--Hb_003053_020 Hb_002878_020 Hb_002878_020 Hb_086639_030--Hb_002878_020 Hb_000805_020--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_000805_020--Hb_007416_320 Hb_007441_200 Hb_007441_200 Hb_000805_020--Hb_007441_200 Hb_000120_460 Hb_000120_460 Hb_000976_170--Hb_000120_460 Hb_108350_010 Hb_108350_010 Hb_000976_170--Hb_108350_010 Hb_002183_090 Hb_002183_090 Hb_000976_170--Hb_002183_090 Hb_000085_050 Hb_000085_050 Hb_000976_170--Hb_000085_050 Hb_025240_040 Hb_025240_040 Hb_000976_170--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_000976_170--Hb_127552_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2176 3.05599 2.16288 2.40102 3.15844 4.70764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63777 6.78764 6.48727 7.13558 1.64935

CAGE analysis