Hb_003687_240

Information

Type -
Description -
Location Contig3687: 176540-183278
Sequence    

Annotation

kegg
ID rcu:RCOM_1006940
description DNA photolyase, putative (EC:4.1.99.3)
nr
ID XP_012069829.1
description PREDICTED: cryptochrome-1 [Jatropha curcas]
swissprot
ID Q96524
description Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
trembl
ID A0A067L8A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02327 PE=4 SV=1
Gene Ontology
ID GO:0003913
description cryptochrome-1-like isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37948: 176495-183174 , PASA_asmbl_37949: 176495-183174 , PASA_asmbl_37950: 182641-183174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_240 0.0 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
2 Hb_010883_090 0.082049264 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
3 Hb_002631_060 0.0898044289 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
4 Hb_000805_020 0.0918715811 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
5 Hb_007747_200 0.0925160236 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
6 Hb_000696_040 0.0953404257 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_021596_040 0.097320228 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001635_060 0.0989525743 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
9 Hb_007441_230 0.1010874574 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
10 Hb_000340_390 0.1011688084 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
11 Hb_001892_020 0.1028760725 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_001969_090 0.1033421072 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
13 Hb_001123_230 0.1038998787 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
14 Hb_000291_110 0.1040143921 - - eukaryotic translation initiation factor [Hevea brasiliensis]
15 Hb_000019_130 0.1044751139 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
16 Hb_004607_030 0.1056009063 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
17 Hb_165026_020 0.1077509394 transcription factor TF Family: NAC hypothetical protein POPTR_0014s10300g [Populus trichocarpa]
18 Hb_016901_010 0.107771957 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
19 Hb_004907_110 0.1078077162 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
20 Hb_000343_130 0.1094070731 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003687_240 Hb_003687_240 Hb_010883_090 Hb_010883_090 Hb_003687_240--Hb_010883_090 Hb_002631_060 Hb_002631_060 Hb_003687_240--Hb_002631_060 Hb_000805_020 Hb_000805_020 Hb_003687_240--Hb_000805_020 Hb_007747_200 Hb_007747_200 Hb_003687_240--Hb_007747_200 Hb_000696_040 Hb_000696_040 Hb_003687_240--Hb_000696_040 Hb_021596_040 Hb_021596_040 Hb_003687_240--Hb_021596_040 Hb_010883_090--Hb_002631_060 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_010883_090--Hb_000805_020 Hb_001892_020 Hb_001892_020 Hb_010883_090--Hb_001892_020 Hb_004907_110 Hb_004907_110 Hb_010883_090--Hb_004907_110 Hb_002631_060--Hb_004907_110 Hb_003376_350 Hb_003376_350 Hb_002631_060--Hb_003376_350 Hb_007416_320 Hb_007416_320 Hb_002631_060--Hb_007416_320 Hb_000260_270 Hb_000260_270 Hb_002631_060--Hb_000260_270 Hb_000395_190 Hb_000395_190 Hb_002631_060--Hb_000395_190 Hb_000805_020--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_000805_020--Hb_007416_320 Hb_007441_200 Hb_007441_200 Hb_000805_020--Hb_007441_200 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_000317_280 Hb_000317_280 Hb_007747_200--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_007747_200--Hb_006846_110 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010 Hb_001699_130 Hb_001699_130 Hb_000696_040--Hb_001699_130 Hb_004607_030 Hb_004607_030 Hb_000696_040--Hb_004607_030 Hb_000696_040--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_000696_040--Hb_000617_150 Hb_000062_220 Hb_000062_220 Hb_000696_040--Hb_000062_220 Hb_000696_040--Hb_002631_060 Hb_021596_040--Hb_001699_130 Hb_011214_020 Hb_011214_020 Hb_021596_040--Hb_011214_020 Hb_000367_060 Hb_000367_060 Hb_021596_040--Hb_000367_060 Hb_012114_040 Hb_012114_040 Hb_021596_040--Hb_012114_040 Hb_021596_040--Hb_007441_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.7139 51.3645 11.7527 36.4125 43.7081 66.9266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.2726 74.8505 133.367 65.5532 18.3544

CAGE analysis