Hb_012114_040

Information

Type -
Description -
Location Contig12114: 19976-25948
Sequence    

Annotation

kegg
ID rcu:RCOM_1686510
description DNA binding protein, putative
nr
ID XP_002509794.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GXB3
description AT-hook motif nuclear-localized protein 5 OS=Arabidopsis thaliana GN=AHL5 PE=1 SV=1
trembl
ID B9RCB0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1686510 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06501: 20096-25077
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012114_040 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001663_050 0.0610244374 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
3 Hb_005568_120 0.0675295256 - - Prephenate dehydratase [Hevea brasiliensis]
4 Hb_155764_010 0.0874248168 - - -
5 Hb_032208_060 0.0875571008 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
6 Hb_001519_050 0.0896284359 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
7 Hb_002061_040 0.0899162599 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
8 Hb_011173_050 0.0899789193 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
9 Hb_000373_130 0.0902220205 - - PREDICTED: protein FAM188A [Jatropha curcas]
10 Hb_011214_020 0.0913182972 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
11 Hb_028515_010 0.0930629683 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
12 Hb_086639_030 0.0932538711 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_011953_020 0.0942987064 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
14 Hb_034406_030 0.0968910179 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
15 Hb_029866_020 0.0970876455 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
16 Hb_012675_060 0.0979912772 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
17 Hb_001481_140 0.0980338308 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
18 Hb_033642_080 0.099462725 - - V-type proton ATPase subunit E [Hevea brasiliensis]
19 Hb_011534_030 0.0995863365 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
20 Hb_116898_010 0.099806092 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012114_040 Hb_012114_040 Hb_001663_050 Hb_001663_050 Hb_012114_040--Hb_001663_050 Hb_005568_120 Hb_005568_120 Hb_012114_040--Hb_005568_120 Hb_155764_010 Hb_155764_010 Hb_012114_040--Hb_155764_010 Hb_032208_060 Hb_032208_060 Hb_012114_040--Hb_032208_060 Hb_001519_050 Hb_001519_050 Hb_012114_040--Hb_001519_050 Hb_002061_040 Hb_002061_040 Hb_012114_040--Hb_002061_040 Hb_086639_030 Hb_086639_030 Hb_001663_050--Hb_086639_030 Hb_034406_030 Hb_034406_030 Hb_001663_050--Hb_034406_030 Hb_001663_050--Hb_032208_060 Hb_007416_320 Hb_007416_320 Hb_001663_050--Hb_007416_320 Hb_001663_050--Hb_005568_120 Hb_028515_010 Hb_028515_010 Hb_005568_120--Hb_028515_010 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_004567_120 Hb_004567_120 Hb_005568_120--Hb_004567_120 Hb_000373_130 Hb_000373_130 Hb_005568_120--Hb_000373_130 Hb_003097_210 Hb_003097_210 Hb_155764_010--Hb_003097_210 Hb_116898_010 Hb_116898_010 Hb_155764_010--Hb_116898_010 Hb_027073_040 Hb_027073_040 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_000010_470 Hb_000010_470 Hb_155764_010--Hb_000010_470 Hb_032208_060--Hb_028515_010 Hb_032208_060--Hb_005568_120 Hb_001481_140 Hb_001481_140 Hb_032208_060--Hb_001481_140 Hb_005883_100 Hb_005883_100 Hb_032208_060--Hb_005883_100 Hb_000635_150 Hb_000635_150 Hb_001519_050--Hb_000635_150 Hb_001519_050--Hb_000373_130 Hb_000125_190 Hb_000125_190 Hb_001519_050--Hb_000125_190 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_001519_050--Hb_002061_040 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_002061_040--Hb_007416_320 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.5649 10.4167 5.58174 9.06432 7.8162 12.2884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2394 30.8764 29.4174 19.5896 8.38178

CAGE analysis