Hb_000296_070

Information

Type -
Description -
Location Contig296: 133046-134325
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07700g
description POPTRDRAFT_576565; hypothetical protein
nr
ID KJB18362.1
description hypothetical protein B456_003G048700 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2MJC5
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G048700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000296_070 0.0 - - hypothetical protein B456_003G048700 [Gossypium raimondii]
2 Hb_000252_170 0.0682599963 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
3 Hb_007254_070 0.0821446604 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
4 Hb_002903_060 0.0961877147 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
5 Hb_000123_210 0.0968000851 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
6 Hb_000907_110 0.0971705998 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
7 Hb_120327_010 0.0998985292 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
8 Hb_004954_070 0.1010949341 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
9 Hb_000009_320 0.1032914966 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
10 Hb_004994_220 0.1046197661 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_031340_050 0.1048877528 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
12 Hb_000009_570 0.106366737 - - PREDICTED: cytochrome P450 CYP82D47-like [Populus euphratica]
13 Hb_000487_290 0.106830485 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
14 Hb_001454_090 0.1069633711 - - PREDICTED: alanyl-tRNA editing protein Aarsd1 isoform X1 [Jatropha curcas]
15 Hb_000556_160 0.1080736108 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
16 Hb_011249_010 0.1104422461 - - PREDICTED: N-alpha-acetyltransferase 35, NatC auxiliary subunit isoform X1 [Jatropha curcas]
17 Hb_000193_190 0.110787422 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
18 Hb_000096_070 0.111935361 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
19 Hb_001190_070 0.1120194282 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
20 Hb_009558_030 0.1122906559 - - myb3r3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000296_070 Hb_000296_070 Hb_000252_170 Hb_000252_170 Hb_000296_070--Hb_000252_170 Hb_007254_070 Hb_007254_070 Hb_000296_070--Hb_007254_070 Hb_002903_060 Hb_002903_060 Hb_000296_070--Hb_002903_060 Hb_000123_210 Hb_000123_210 Hb_000296_070--Hb_000123_210 Hb_000907_110 Hb_000907_110 Hb_000296_070--Hb_000907_110 Hb_120327_010 Hb_120327_010 Hb_000296_070--Hb_120327_010 Hb_000252_170--Hb_000123_210 Hb_031340_050 Hb_031340_050 Hb_000252_170--Hb_031340_050 Hb_000252_170--Hb_000907_110 Hb_001357_250 Hb_001357_250 Hb_000252_170--Hb_001357_250 Hb_000556_160 Hb_000556_160 Hb_000252_170--Hb_000556_160 Hb_167498_010 Hb_167498_010 Hb_007254_070--Hb_167498_010 Hb_004355_020 Hb_004355_020 Hb_007254_070--Hb_004355_020 Hb_007254_070--Hb_120327_010 Hb_007254_070--Hb_002903_060 Hb_000395_130 Hb_000395_130 Hb_007254_070--Hb_000395_130 Hb_003158_010 Hb_003158_010 Hb_007254_070--Hb_003158_010 Hb_000245_040 Hb_000245_040 Hb_002903_060--Hb_000245_040 Hb_000028_280 Hb_000028_280 Hb_002903_060--Hb_000028_280 Hb_000191_150 Hb_000191_150 Hb_002903_060--Hb_000191_150 Hb_002213_070 Hb_002213_070 Hb_002903_060--Hb_002213_070 Hb_011485_070 Hb_011485_070 Hb_002903_060--Hb_011485_070 Hb_001143_160 Hb_001143_160 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020 Hb_000181_400 Hb_000181_400 Hb_000907_110--Hb_000181_400 Hb_033642_090 Hb_033642_090 Hb_000907_110--Hb_033642_090 Hb_000907_110--Hb_001357_250 Hb_028285_010 Hb_028285_010 Hb_000907_110--Hb_028285_010 Hb_004324_130 Hb_004324_130 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_000827_070 Hb_000827_070 Hb_120327_010--Hb_000827_070 Hb_044728_010 Hb_044728_010 Hb_120327_010--Hb_044728_010 Hb_004800_080 Hb_004800_080 Hb_120327_010--Hb_004800_080 Hb_120327_010--Hb_000225_040 Hb_000107_330 Hb_000107_330 Hb_120327_010--Hb_000107_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3272 2.48454 1.19994 0.97872 3.17798 2.69585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.76622 2.35474 2.49938 3.32459 1.2085

CAGE analysis