Hb_004242_190

Information

Type -
Description -
Location Contig4242: 163248-165659
Sequence    

Annotation

kegg
ID rcu:RCOM_1181730
description Leucoanthocyanidin dioxygenase, putative (EC:1.14.11.23)
nr
ID XP_002528475.1
description Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9SR56
description Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis GN=RCOM_1181730 PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41971: 163326-165500 , PASA_asmbl_41972: 163905-164299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_190 0.0 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
2 Hb_001258_060 0.1332862542 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
3 Hb_028872_060 0.1514676063 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
4 Hb_000805_320 0.1568247703 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
5 Hb_006816_200 0.1582662863 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002407_080 0.1624870201 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
7 Hb_003120_030 0.1648615675 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
8 Hb_002028_220 0.1693420095 - - aminoadipic semialdehyde synthase, putative [Ricinus communis]
9 Hb_008864_090 0.1724716074 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
10 Hb_004230_040 0.1751867795 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010480_030 0.1759734195 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
12 Hb_003160_020 0.176805666 - - PREDICTED: uncharacterized protein LOC105639457 [Jatropha curcas]
13 Hb_003647_030 0.1771808798 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
14 Hb_002972_020 0.1788240024 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
15 Hb_000252_170 0.1803682565 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
16 Hb_001507_100 0.1840951432 - - cytochrome P450, putative [Ricinus communis]
17 Hb_014894_010 0.1865054675 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
18 Hb_007451_020 0.1866933692 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
19 Hb_000676_190 0.1885450364 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
20 Hb_001472_120 0.1886146604 - - -

Gene co-expression network

sample Hb_004242_190 Hb_004242_190 Hb_001258_060 Hb_001258_060 Hb_004242_190--Hb_001258_060 Hb_028872_060 Hb_028872_060 Hb_004242_190--Hb_028872_060 Hb_000805_320 Hb_000805_320 Hb_004242_190--Hb_000805_320 Hb_006816_200 Hb_006816_200 Hb_004242_190--Hb_006816_200 Hb_002407_080 Hb_002407_080 Hb_004242_190--Hb_002407_080 Hb_003120_030 Hb_003120_030 Hb_004242_190--Hb_003120_030 Hb_014894_010 Hb_014894_010 Hb_001258_060--Hb_014894_010 Hb_008864_090 Hb_008864_090 Hb_001258_060--Hb_008864_090 Hb_001246_030 Hb_001246_030 Hb_001258_060--Hb_001246_030 Hb_001258_060--Hb_000805_320 Hb_007763_030 Hb_007763_030 Hb_001258_060--Hb_007763_030 Hb_001150_040 Hb_001150_040 Hb_028872_060--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_028872_060--Hb_004230_040 Hb_000640_300 Hb_000640_300 Hb_028872_060--Hb_000640_300 Hb_000009_620 Hb_000009_620 Hb_028872_060--Hb_000009_620 Hb_155123_010 Hb_155123_010 Hb_028872_060--Hb_155123_010 Hb_094437_060 Hb_094437_060 Hb_000805_320--Hb_094437_060 Hb_105602_010 Hb_105602_010 Hb_000805_320--Hb_105602_010 Hb_003073_180 Hb_003073_180 Hb_000805_320--Hb_003073_180 Hb_000805_320--Hb_014894_010 Hb_002027_140 Hb_002027_140 Hb_006816_200--Hb_002027_140 Hb_004800_070 Hb_004800_070 Hb_006816_200--Hb_004800_070 Hb_006114_010 Hb_006114_010 Hb_006816_200--Hb_006114_010 Hb_000252_170 Hb_000252_170 Hb_006816_200--Hb_000252_170 Hb_009687_010 Hb_009687_010 Hb_006816_200--Hb_009687_010 Hb_002471_150 Hb_002471_150 Hb_006816_200--Hb_002471_150 Hb_002407_080--Hb_003073_180 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_002407_080--Hb_001258_060 Hb_002407_080--Hb_000009_620 Hb_005273_040 Hb_005273_040 Hb_002407_080--Hb_005273_040 Hb_001329_220 Hb_001329_220 Hb_003120_030--Hb_001329_220 Hb_000500_090 Hb_000500_090 Hb_003120_030--Hb_000500_090 Hb_002333_080 Hb_002333_080 Hb_003120_030--Hb_002333_080 Hb_003159_080 Hb_003159_080 Hb_003120_030--Hb_003159_080 Hb_003976_010 Hb_003976_010 Hb_003120_030--Hb_003976_010 Hb_004048_070 Hb_004048_070 Hb_003120_030--Hb_004048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9763 21.5941 6.96171 9.03336 41.0143 34.5691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.8071 41.2685 34.8131 116.607 4.7927

CAGE analysis