Hb_003073_180

Information

Type -
Description -
Location Contig3073: 146260-149645
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID KDP27374.1
description hypothetical protein JCGZ_20198 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004713
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32460: 146388-147099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_180 0.0 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
2 Hb_002407_080 0.167440373 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
3 Hb_000805_320 0.168723814 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
4 Hb_000209_110 0.1711450568 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
5 Hb_001258_060 0.1863571449 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
6 Hb_080147_100 0.18730279 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
7 Hb_006586_030 0.1953184498 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
8 Hb_008864_090 0.1995850598 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
9 Hb_004242_190 0.2003537414 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_138585_110 0.2004991246 - - -
11 Hb_039145_010 0.2095407337 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
12 Hb_014894_010 0.2160972257 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
13 Hb_000157_130 0.218496723 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X2 [Populus euphratica]
14 Hb_000005_250 0.2214113462 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004462_010 0.2221763667 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
16 Hb_000645_110 0.2223938172 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
17 Hb_094437_060 0.2246743452 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
18 Hb_001104_240 0.2255735199 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
19 Hb_004976_050 0.2315925653 - - -
20 Hb_000120_390 0.2317955452 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]

Gene co-expression network

sample Hb_003073_180 Hb_003073_180 Hb_002407_080 Hb_002407_080 Hb_003073_180--Hb_002407_080 Hb_000805_320 Hb_000805_320 Hb_003073_180--Hb_000805_320 Hb_000209_110 Hb_000209_110 Hb_003073_180--Hb_000209_110 Hb_001258_060 Hb_001258_060 Hb_003073_180--Hb_001258_060 Hb_080147_100 Hb_080147_100 Hb_003073_180--Hb_080147_100 Hb_006586_030 Hb_006586_030 Hb_003073_180--Hb_006586_030 Hb_004242_190 Hb_004242_190 Hb_002407_080--Hb_004242_190 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_002407_080--Hb_001258_060 Hb_000009_620 Hb_000009_620 Hb_002407_080--Hb_000009_620 Hb_005273_040 Hb_005273_040 Hb_002407_080--Hb_005273_040 Hb_094437_060 Hb_094437_060 Hb_000805_320--Hb_094437_060 Hb_000805_320--Hb_004242_190 Hb_105602_010 Hb_105602_010 Hb_000805_320--Hb_105602_010 Hb_000805_320--Hb_001258_060 Hb_014894_010 Hb_014894_010 Hb_000805_320--Hb_014894_010 Hb_000544_100 Hb_000544_100 Hb_000209_110--Hb_000544_100 Hb_000209_110--Hb_006586_030 Hb_000093_150 Hb_000093_150 Hb_000209_110--Hb_000093_150 Hb_004462_010 Hb_004462_010 Hb_000209_110--Hb_004462_010 Hb_000209_110--Hb_002407_080 Hb_001258_060--Hb_014894_010 Hb_001258_060--Hb_004242_190 Hb_008864_090 Hb_008864_090 Hb_001258_060--Hb_008864_090 Hb_001246_030 Hb_001246_030 Hb_001258_060--Hb_001246_030 Hb_007763_030 Hb_007763_030 Hb_001258_060--Hb_007763_030 Hb_080147_100--Hb_000805_320 Hb_105328_030 Hb_105328_030 Hb_080147_100--Hb_105328_030 Hb_080147_100--Hb_094437_060 Hb_001504_120 Hb_001504_120 Hb_080147_100--Hb_001504_120 Hb_003750_030 Hb_003750_030 Hb_080147_100--Hb_003750_030 Hb_001104_240 Hb_001104_240 Hb_006586_030--Hb_001104_240 Hb_002827_020 Hb_002827_020 Hb_006586_030--Hb_002827_020 Hb_001524_090 Hb_001524_090 Hb_006586_030--Hb_001524_090 Hb_000086_660 Hb_000086_660 Hb_006586_030--Hb_000086_660 Hb_001269_690 Hb_001269_690 Hb_006586_030--Hb_001269_690 Hb_000200_280 Hb_000200_280 Hb_006586_030--Hb_000200_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.723071 0.636212 0.271602 0.242729 0.455257 0.70682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.508205 0.733158 0.712104 4.78395 0.0850776

CAGE analysis