Hb_000544_100

Information

Type -
Description -
Location Contig544: 140666-142868
Sequence    

Annotation

kegg
ID egr:104425833
description ras-related protein RABA6b-like
nr
ID KDP41145.1
description hypothetical protein JCGZ_03636 [Jatropha curcas]
swissprot
ID Q0WQN4
description Ras-related protein RABA6b OS=Arabidopsis thaliana GN=RABA6B PE=2 SV=2
trembl
ID A0A067L9G4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03636 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba6b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_100 0.0 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
2 Hb_004462_010 0.1679695824 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
3 Hb_000209_110 0.1684668988 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
4 Hb_004724_120 0.219229515 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
5 Hb_002477_220 0.2197850825 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
6 Hb_001636_020 0.233541416 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
7 Hb_182680_010 0.2384088659 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
8 Hb_001524_090 0.238794445 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
9 Hb_001587_010 0.252071127 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
10 Hb_000093_150 0.2568461483 - - 6-phosphogluconolactonase, putative [Ricinus communis]
11 Hb_003073_180 0.259579487 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
12 Hb_006586_030 0.2634627709 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
13 Hb_134894_010 0.2644927949 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
14 Hb_022819_010 0.2647956387 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_000364_200 0.2649031499 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_007943_160 0.2657424126 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
17 Hb_002407_080 0.2687931435 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
18 Hb_003640_030 0.2698396945 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
19 Hb_000315_030 0.2723153493 - - carbohydrate binding protein, putative [Ricinus communis]
20 Hb_014834_020 0.2746301169 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000544_100 Hb_000544_100 Hb_004462_010 Hb_004462_010 Hb_000544_100--Hb_004462_010 Hb_000209_110 Hb_000209_110 Hb_000544_100--Hb_000209_110 Hb_004724_120 Hb_004724_120 Hb_000544_100--Hb_004724_120 Hb_002477_220 Hb_002477_220 Hb_000544_100--Hb_002477_220 Hb_001636_020 Hb_001636_020 Hb_000544_100--Hb_001636_020 Hb_182680_010 Hb_182680_010 Hb_000544_100--Hb_182680_010 Hb_000093_150 Hb_000093_150 Hb_004462_010--Hb_000093_150 Hb_127886_010 Hb_127886_010 Hb_004462_010--Hb_127886_010 Hb_001524_090 Hb_001524_090 Hb_004462_010--Hb_001524_090 Hb_004462_010--Hb_001636_020 Hb_004462_010--Hb_000209_110 Hb_003073_180 Hb_003073_180 Hb_000209_110--Hb_003073_180 Hb_006586_030 Hb_006586_030 Hb_000209_110--Hb_006586_030 Hb_000209_110--Hb_000093_150 Hb_002407_080 Hb_002407_080 Hb_000209_110--Hb_002407_080 Hb_000733_270 Hb_000733_270 Hb_004724_120--Hb_000733_270 Hb_000130_060 Hb_000130_060 Hb_004724_120--Hb_000130_060 Hb_004724_120--Hb_001636_020 Hb_000679_200 Hb_000679_200 Hb_004724_120--Hb_000679_200 Hb_002666_020 Hb_002666_020 Hb_004724_120--Hb_002666_020 Hb_054885_020 Hb_054885_020 Hb_004724_120--Hb_054885_020 Hb_000283_150 Hb_000283_150 Hb_002477_220--Hb_000283_150 Hb_007380_040 Hb_007380_040 Hb_002477_220--Hb_007380_040 Hb_000406_060 Hb_000406_060 Hb_002477_220--Hb_000406_060 Hb_000022_170 Hb_000022_170 Hb_002477_220--Hb_000022_170 Hb_003640_030 Hb_003640_030 Hb_002477_220--Hb_003640_030 Hb_002477_220--Hb_001636_020 Hb_002972_020 Hb_002972_020 Hb_001636_020--Hb_002972_020 Hb_001636_020--Hb_000406_060 Hb_000021_030 Hb_000021_030 Hb_001636_020--Hb_000021_030 Hb_001009_080 Hb_001009_080 Hb_001636_020--Hb_001009_080 Hb_001427_070 Hb_001427_070 Hb_001636_020--Hb_001427_070 Hb_002836_100 Hb_002836_100 Hb_001636_020--Hb_002836_100 Hb_004143_120 Hb_004143_120 Hb_182680_010--Hb_004143_120 Hb_000343_100 Hb_000343_100 Hb_182680_010--Hb_000343_100 Hb_007943_160 Hb_007943_160 Hb_182680_010--Hb_007943_160 Hb_182680_010--Hb_000209_110 Hb_009467_040 Hb_009467_040 Hb_182680_010--Hb_009467_040 Hb_003428_100 Hb_003428_100 Hb_182680_010--Hb_003428_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68476 1.22262 0.193667 2.1141 1.44334 3.2866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241071 0.265452 0.55984 11.5638 0.233389

CAGE analysis