Hb_004724_120

Information

Type -
Description -
Location Contig4724: 111926-112378
Sequence    

Annotation

kegg
ID rcu:RCOM_1281630
description Ferredoxin-3, chloroplast precursor, putative
nr
ID XP_012084582.1
description PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
swissprot
ID Q9ZQG8
description Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1
trembl
ID A0A067K6F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20218 PE=4 SV=1
Gene Ontology
ID GO:0009055
description root r-b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44332: 109641-112679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_120 0.0 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
2 Hb_000733_270 0.177600916 - - PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
3 Hb_000130_060 0.1881678861 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_001636_020 0.2075674849 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
5 Hb_000679_200 0.2101140351 - - EIN3-binding F box protein 1 [Theobroma cacao]
6 Hb_002666_020 0.2135865298 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
7 Hb_054885_020 0.2173639693 - - -
8 Hb_004462_010 0.2176107958 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
9 Hb_000544_100 0.219229515 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
10 Hb_004040_040 0.2218194776 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
11 Hb_026337_010 0.2238371458 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10002052mg [Citrus clementina]
12 Hb_134894_010 0.2238892312 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
13 Hb_002836_100 0.2250116061 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
14 Hb_007380_040 0.2258969585 - - receptor-kinase, putative [Ricinus communis]
15 Hb_077573_010 0.2270610213 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_007785_010 0.2274809552 - - glutathione peroxidase, putative [Ricinus communis]
17 Hb_003640_030 0.2277104519 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
18 Hb_003972_040 0.2292898568 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
19 Hb_000413_230 0.2293250106 - - thioredoxin h [Hevea brasiliensis]
20 Hb_006769_010 0.2297705253 - - hypothetical protein JCGZ_00291 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_120 Hb_004724_120 Hb_000733_270 Hb_000733_270 Hb_004724_120--Hb_000733_270 Hb_000130_060 Hb_000130_060 Hb_004724_120--Hb_000130_060 Hb_001636_020 Hb_001636_020 Hb_004724_120--Hb_001636_020 Hb_000679_200 Hb_000679_200 Hb_004724_120--Hb_000679_200 Hb_002666_020 Hb_002666_020 Hb_004724_120--Hb_002666_020 Hb_054885_020 Hb_054885_020 Hb_004724_120--Hb_054885_020 Hb_084470_010 Hb_084470_010 Hb_000733_270--Hb_084470_010 Hb_002235_140 Hb_002235_140 Hb_000733_270--Hb_002235_140 Hb_000021_100 Hb_000021_100 Hb_000733_270--Hb_000021_100 Hb_007785_010 Hb_007785_010 Hb_000733_270--Hb_007785_010 Hb_003073_170 Hb_003073_170 Hb_000733_270--Hb_003073_170 Hb_000362_110 Hb_000362_110 Hb_000130_060--Hb_000362_110 Hb_002370_030 Hb_002370_030 Hb_000130_060--Hb_002370_030 Hb_026337_010 Hb_026337_010 Hb_000130_060--Hb_026337_010 Hb_003640_030 Hb_003640_030 Hb_000130_060--Hb_003640_030 Hb_007426_140 Hb_007426_140 Hb_000130_060--Hb_007426_140 Hb_002972_020 Hb_002972_020 Hb_001636_020--Hb_002972_020 Hb_000406_060 Hb_000406_060 Hb_001636_020--Hb_000406_060 Hb_000021_030 Hb_000021_030 Hb_001636_020--Hb_000021_030 Hb_001009_080 Hb_001009_080 Hb_001636_020--Hb_001009_080 Hb_001427_070 Hb_001427_070 Hb_001636_020--Hb_001427_070 Hb_002836_100 Hb_002836_100 Hb_001636_020--Hb_002836_100 Hb_060391_010 Hb_060391_010 Hb_000679_200--Hb_060391_010 Hb_000098_300 Hb_000098_300 Hb_000679_200--Hb_000098_300 Hb_000679_200--Hb_026337_010 Hb_007333_040 Hb_007333_040 Hb_000679_200--Hb_007333_040 Hb_003972_040 Hb_003972_040 Hb_000679_200--Hb_003972_040 Hb_000733_210 Hb_000733_210 Hb_002666_020--Hb_000733_210 Hb_000853_400 Hb_000853_400 Hb_002666_020--Hb_000853_400 Hb_002666_020--Hb_001636_020 Hb_000544_050 Hb_000544_050 Hb_002666_020--Hb_000544_050 Hb_000193_140 Hb_000193_140 Hb_002666_020--Hb_000193_140 Hb_002375_110 Hb_002375_110 Hb_054885_020--Hb_002375_110 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_008143_070 Hb_008143_070 Hb_054885_020--Hb_008143_070 Hb_005260_040 Hb_005260_040 Hb_054885_020--Hb_005260_040 Hb_004040_040 Hb_004040_040 Hb_054885_020--Hb_004040_040 Hb_000537_140 Hb_000537_140 Hb_054885_020--Hb_000537_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4674 58.7976 17.9798 77.5727 19.4617 112.75
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.75966 6.60493 12.3885 152.697 6.3677

CAGE analysis