Hb_002235_140

Information

Type -
Description -
Location Contig2235: 85239-86213
Sequence    

Annotation

kegg
ID rcu:RCOM_0538340
description hypothetical protein
nr
ID XP_002530020.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVK1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0538340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23211: 85754-85899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002918_090 0.1499171565 - - PREDICTED: auxin-repressed 12.5 kDa protein-like [Nelumbo nucifera]
3 Hb_009848_040 0.1688083656 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
4 Hb_001396_150 0.2005561064 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
5 Hb_009848_030 0.2037491421 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
6 Hb_000375_370 0.209603638 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_031089_030 0.2158758476 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
8 Hb_000733_270 0.2214105367 - - PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
9 Hb_003157_030 0.2217293474 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
10 Hb_000122_140 0.2218968588 - - -
11 Hb_084429_010 0.2228123407 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
12 Hb_139859_010 0.2230587945 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
13 Hb_005144_030 0.2268811903 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
14 Hb_011206_010 0.2300402912 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
15 Hb_001396_260 0.2315144504 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
16 Hb_000189_420 0.2316609703 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
17 Hb_006501_020 0.232658378 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
18 Hb_000021_100 0.2334692339 - - -
19 Hb_057490_010 0.2353723588 - - PREDICTED: mannose-1-phosphate guanyltransferase alpha [Jatropha curcas]
20 Hb_003299_090 0.2394239491 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]

Gene co-expression network

sample Hb_002235_140 Hb_002235_140 Hb_002918_090 Hb_002918_090 Hb_002235_140--Hb_002918_090 Hb_009848_040 Hb_009848_040 Hb_002235_140--Hb_009848_040 Hb_001396_150 Hb_001396_150 Hb_002235_140--Hb_001396_150 Hb_009848_030 Hb_009848_030 Hb_002235_140--Hb_009848_030 Hb_000375_370 Hb_000375_370 Hb_002235_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_002235_140--Hb_031089_030 Hb_002918_090--Hb_000375_370 Hb_057490_010 Hb_057490_010 Hb_002918_090--Hb_057490_010 Hb_001396_260 Hb_001396_260 Hb_002918_090--Hb_001396_260 Hb_002918_090--Hb_009848_040 Hb_003299_090 Hb_003299_090 Hb_002918_090--Hb_003299_090 Hb_012423_010 Hb_012423_010 Hb_009848_040--Hb_012423_010 Hb_084429_010 Hb_084429_010 Hb_009848_040--Hb_084429_010 Hb_009848_040--Hb_009848_030 Hb_004096_080 Hb_004096_080 Hb_009848_040--Hb_004096_080 Hb_006588_150 Hb_006588_150 Hb_009848_040--Hb_006588_150 Hb_157846_010 Hb_157846_010 Hb_001396_150--Hb_157846_010 Hb_000217_060 Hb_000217_060 Hb_001396_150--Hb_000217_060 Hb_001396_150--Hb_000375_370 Hb_049160_010 Hb_049160_010 Hb_001396_150--Hb_049160_010 Hb_114261_010 Hb_114261_010 Hb_001396_150--Hb_114261_010 Hb_000032_310 Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_001989_020 Hb_001989_020 Hb_009848_030--Hb_001989_020 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_003656_120 Hb_003656_120 Hb_009848_030--Hb_003656_120 Hb_005122_060 Hb_005122_060 Hb_000375_370--Hb_005122_060 Hb_000375_370--Hb_031089_030 Hb_001247_140 Hb_001247_140 Hb_000375_370--Hb_001247_140 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_006501_020 Hb_006501_020 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060 Hb_007257_050 Hb_007257_050 Hb_031089_030--Hb_007257_050 Hb_003299_080 Hb_003299_080 Hb_031089_030--Hb_003299_080 Hb_031089_030--Hb_084429_010 Hb_031089_030--Hb_001396_260 Hb_031089_030--Hb_001247_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22675 2.83283 0.0713764 0.865936 1.97661 6.67183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0984 0.493638 0 2.89682 0.167999

CAGE analysis